Job Description P46889 Confidence 94.08% Date Wed Jan 25 15:20:57 GMT 2012 Rank 45 Aligned Residues 185 % Identity 18% Template c1cu1B_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:protein (protease/helicase ns3); PDBTitle: crystal structure of an enzyme complex from hepatitis c2 virus Resolution 2.50 Å

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		987	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	V	A	G	T	T	G	S	G	K	S	V	G	V	N	A	M	I	L	S	M	L	Y	K	A	Q	P	E	D	V	R	F	I	M	I	D	P	K	M	L	E	L	S	V	Y	E	G	I	P	H	L	L	T	E	V	V	T	D	M	K	D	A	A	N	A	L	R	W	C	V	N	E	M	E	R	R	Y	K	L
Query Conservation
Alig confidence																							.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	H	L	H	A	P	T	G	S	G	K	S	T	K	V	P	A	A	Y	A	A	.	.	.	.	.	.	.	Q	G	Y	K	V	L	V	L	N	P	S	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	A	T	L	G	F	G	A	Y	M	S	K
Template Known Secondary structure								T	T	S		T	T	T									.	.	.	.	.	.	.	T	T								S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																							.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220								.	.	.	.	.	.	.	.	.	1230	.	.																													.	.	.	.	.	.	.	1240	.	.	.	.
		1067	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	S	A	L	G	V	R	N	L	A	G	Y	N	E	K	I	A	E	A	D	R	M	M	R	P	I	P	D	P	Y	W	K	P	G	D	S	M	D	A	Q	H	P	V	L	K	K	E	P	Y	I	V	V	L	V	D	E	F	A	D	L	M	M	T	V	G	K	K	V	E	E	L	I	A	R	L	A	Q	K	A	R
Query Conservation
Alig confidence																							.	.	.	.	.	.	.																			.	.												.	.	.	.
Template Conservation																							.	.	.	.	.	.	.																			.	.												.	.	.	.
Template Sequence		A	H	G	I	D	P	N	I	R	T	G	V	R	T	I	T	T	G	A	P	V	.	.	.	.	.	.	.	T	Y	S	T	Y	G	K	F	L	A	D	G	G	C	S	G	G	A	.	.	Y	D	I	I	I	C	D	E	C	H	S	.	.	.	.	T	D	S	T	T	I	L	G	I	G	T	V	L	D	Q	A	E
Template Known Secondary structure												S	S								S		.	.	.	.	.	.	.											T	T	S			T	T	S	.	.		S					T	T	T	T		.	.	.	.		S														T	T
Template Predicted Secondary structure																							.	.	.	.	.	.	.																			.	.												.	.	.	.
Template SS confidence
		1245	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260	.	.	.	.	.								.	.	.	.	1270	.	.	.	.	.	.	.	.	.	1280	.	.	.			.	.	.	.	.	.	1290	.	.	.	.					.	.	.	.	.	1300	.	.	.	.	.	.	.	.	.	1310	.
		1147	.	.		1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220	.	.	.	.	.
Predicted Secondary structure					.
Query SS confidence					.
Query Sequence		A	A	G	.	I	H	L	V	L	A	T	Q	R	P	S	V	D	V	I	T	G	L	I	K	A	N	I	P	T	R	I	A	F	T	V	S	S	K	I	D	S	R	T	I	L	D	Q	A	G	A	E	S	L	L	G	M	G	D	M	L	Y	S	G	P	N	S	T	L	P	V	R	V	H	G	A	F	V	R	D	Q
Query Conservation					.
Alig confidence					.																																														.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																			.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	A	G	A	R	L	V	V	L	A	T	A	T	P	P	G	S	V	T	V	P	H	P	N	I	E	E	V	A	L	S	N	T	G	E	I	P	F	Y	G	K	A	I	P	I	E	A	I	R	.	.	.	.	.	.	G	G	R	H	L	I	F	C	H	.	.	.	.	.	.	.	.	.	.	.	.	.	S	K	K
Template Known Secondary structure		T	T	T		S							S	S		T	T							T	T								S		S	S				T	T					G	G	G	T	S	.	.	.	.	.	.	S	S							S	.	.	.	.	.	.	.	.	.	.	.	.	.	S
Template Predicted Secondary structure																																																			.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1312	.	.	.	.	.	.	.	1320	.	.	.	.	.	.	.	.	.	1330	.	.	.	.	.	.	.	.	.	1340	.	.	.	.	.	.	.	.	.	1350	.	.	.	.	.	.	.	.	.	1360							.	.	.	.	.	.	.	.	.														1370	.	.
		1226	.	.	.	1230	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	V	H	A	V	V	Q	D	W	K	A	R	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	C	D	E	L	A	A	K	L	S	G	L	G
Template Known Secondary structure													T	T
Template Predicted Secondary structure
Template SS confidence
		1373	.	.	.	.	.	.	1380	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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