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Job DescriptionP31554
Confidence22.13%DateThu Jan 5 11:48:17 GMT 2012
Rank23Aligned Residues105
% Identity16%Templatec3nb3C_
PDB info PDB header:virusChain: C: PDB Molecule:outer membrane protein a; PDBTitle: the host outer membrane proteins ompa and ompc are packed at specific2 sites in the shigella phage sf6 virion as structural components
Resolution19.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   618.620.........630.........640.........650.........660.........670.........680.........690.......
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Query Sequence  ERWGLRGGIQYDTRLDNVATSNSSIEYRRDEDRLVQLNYRYASPEYIQATLPKYYSTAEQYKNGISQVGAVASWPIADRW
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Template Sequence  NTWYTGAKLGWSQHENKLGA. GAFGGYQVNPYVGFEMGYDWLG. . . . . . . . . . . . RMPYAYKAQGVQLTAKLGYPITDDL
Template Known Secondary structure  T



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   5....10.........20.... .....30.........40...... ...50.........60.........70.
 
   698.700.........710... ......720.. .......730.....
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Query Sequence  SIVGAYYYDTNANKQA. . . . . . . . . . . . . . DSMLGVQYS. SCCYAIRVGYERK
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Template Sequence  DIYTRLGGMVWRADTYSNVYGKNHDTGVSPVFAGGVEYAITPEIATRLEYQWT
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TT
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   92.......100.........110.........120.........130.........140....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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