Job Description P31554 Confidence 3.25% Date Thu Jan 5 11:48:17 GMT 2012 Rank 75 Aligned Residues 47 % Identity 13% Template c3mu3A_ PDB info PDB header:immune system Chain: A: PDB Molecule:protein md-1; PDBTitle: crystal structure of chicken md-1 complexed with lipid iva Resolution 2.40 Å

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		167	.	.	170	.	.	.	.	.	.	.															.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	G	S	F	T	S	C	L	P	G	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	T	W	S	V	V	G	S	E	I	I	H	D	R	E	E	Q	V	A	E	I	W	N	A	R	F	K	V	G	P	V	P	I	F	Y	S	P	Y
Query Conservation													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.				.
Template Conservation																																												.				.
Template Sequence		E	I	Y	Y	K	S	C	D	P	Q	Q	D	F	A	F	S	I	D	R	C	S	D	V	T	T	H	T	F	D	I	R	A	A	M	V	L	R	Q	S	I	K	E	.	L	Y	A	.	K	V	D	L	I	I	N	G	K	T	V	L	S	Y	S	E
Template Known Secondary structure										T	T								S	S	G	G	G	G	G	S	S											S	S			S	S	.				.							T	T
Template Predicted Secondary structure																																												.				.
Template SS confidence
		34	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.		.	.	.		.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions