Job Description P31554 Confidence 99.27% Date Thu Jan 5 11:48:17 GMT 2012 Rank 1 Aligned Residues 123 % Identity 15% Template c2r1aD_ PDB info PDB header:transport protein Chain: D: PDB Molecule:protein yhbn; PDBTitle: crystal structure of the periplasmic lipopolysaccharide transport2 protein lpta (yhbn), trigonal form Resolution 3.26 Å

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		45	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.		.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.
Predicted Secondary structure																						.
Query SS confidence																						.
Query Sequence		G	D	T	N	D	L	P	V	T	I	N	A	D	H	A	K	G	D	Y	P	.	D	D	A	V	F	T	G	S	V	D	I	M	Q	G	N	S	R	L	Q	A	D	E	V	Q	L	H	Q	K	E	A	P	G	Q	P	E	P	V	R	T	V	D	A	L	G	N	V	H	Y	D	D	N	Q	V	I	L	K	G	P	K
Query Conservation																						.
Alig confidence																						.
Template Conservation
Template Sequence		T	G	D	T	D	Q	P	I	H	I	E	S	D	Q	Q	S	L	D	M	Q	G	N	V	V	T	F	T	G	N	V	I	V	T	Q	G	T	I	K	I	N	A	D	K	V	V	V	T	R	P	G	G	K	E	V	I	D	G	Y	G	K	P	A	T	F	Y	Q	M	Q	D	N	G	K	P	V	E	G	H	A	S	Q
Template Known Secondary structure		T	T	T	T	S	S							S						T	T	T														T	T													T	T									S	S	S								T	T	S								S	B
Template Predicted Secondary structure
Template SS confidence
		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
		124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	W	A	N	L	N	T	K	D	T	N	V	W	E	G	D	Y	Q	M	V	G	R	Q	G	R	G	K	A	D	L	M	K	Q	R	G	E	N	R	Y	T	I	L	D	N	G
Query Conservation
Alig confidence																.
Template Conservation																.
Template Sequence		M	H	Y	E	L	A	K	D	F	V	V	L	T	G	.	N	A	Y	L	Q	Q	V	D	S	N	I	K	G	D	K	I	T	Y	L	V	K	E	Q	K	M	Q	A	F	S	D
Template Known Secondary structure					B	T	T	T	T					B	S	.	S						S	S						S						T	T	T	T	B
Template Predicted Secondary structure																.
Template SS confidence
		112	.	.	.	.	.	.	.	120	.	.	.	.	.		.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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