Job Description P31554 Confidence 95.93% Date Thu Jan 5 11:48:17 GMT 2012 Rank 4 Aligned Residues 130 % Identity 16% Template c2k4tA_ PDB info PDB header:membrane protein,apoptosis Chain: A: PDB Molecule:voltage-dependent anion-selective channel PDBTitle: solution structure of human vdac-1 in ldao micelles Resolution UNK

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		607	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	W	A	G	D	T	Y	W	R	I	S	E	R	W	G	L	R	G	G	I	Q	Y	D	T	R	L	D	N	V	A	T	S	N	S	S	I	E	Y	R	R	D	E	D	R	L	V	Q	L	N	Y	R	Y	A	S	P	E	Y	I	Q	A	T	L	P	K	Y	Y	S	T	A	E	Q	Y	K	N	G	I	S	Q	V	G
Query Conservation
Alig confidence																																									.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																									.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	S	I	R	G	A	L	V	L	G	Y	E	G	W	L	A	G	Y	Q	M	N	F	E	T	A	K	S	R	V	T	Q	S	N	F	A	V	G	Y	K	.	T	D	E	F	Q	L	H	T	N	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	D	G	T	E	F	G
Template Known Secondary structure													T	T											T	T	T	T	S												.		S	S								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T	T
Template Predicted Secondary structure																																									.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.		.	.	.	.	.	180	.	.	.	.																								.	.	.	.	.	190	.
		687	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.												.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.
Query SS confidence																																								.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.
Query Sequence		A	V	A	S	W	P	I	A	D	R	W	S	I	V	G	A	Y	Y	Y	D	T	N	A	N	K	Q	A	D	S	M	L	G	V	Q	Y	S	S	C	.	.	.	.	.	.	.	.	.	.	.	C	Y	A	I	R	V	G	Y	E	R	K	L	N	G	W	D	N	D	K	Q	H	A	V	Y	D	.	.	.	.	.	.
Query Conservation																																								.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.
Alig confidence																												.												.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.
Template Conservation																												.
Template Sequence		G	S	I	Y	Q	K	V	N	K	K	L	E	T	A	V	N	L	A	W	T	A	G	N	S	N	T	.	R	F	G	I	A	A	K	Y	Q	I	D	P	D	A	C	F	S	A	K	V	N	N	S	S	L	I	G	L	G	Y	T	Q	T	L	K	P	G	I	K	L	T	L	S	A	L	L	D	G	K	N	V	N	A
Template Known Secondary structure									S	T	T											T	T	S	S			.												T	T									S	S	S											S	S	S										S	T	T		G	G	G
Template Predicted Secondary structure																												.
Template SS confidence
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.		.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
				750	.	.	.	.	.	.	.	.	.	760	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	N	A	I	G	F	N	I	E	L	R	G	L
Query Conservation		.	.
Alig confidence		.	.
Template Conservation
Template Sequence		G	G	H	K	L	G	L	G	L	E	F	Q	A	L
Template Known Secondary structure		T
Template Predicted Secondary structure
Template SS confidence
		271	.	.	.	.	.	.	.	.	280	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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