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Job DescriptionP52045
Confidence100.00%DateThu Jan 5 12:04:59 GMT 2012
Rank70Aligned Residues245
% Identity17%Templatec3m6nA_
PDB info PDB header:lyaseChain: A: PDB Molecule:rpff protein; PDBTitle: crystal structure of rpff
Resolution1.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   6...10.........20.........30.........40... ......50.........60.........70......
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Query Sequence  VNVVTINKVAVIEFNYGRKLNALSKVFIDDLMQALSDL. . . . NRPEIRCIILRAPSGSKVFSAGHDIHELPSGGR. . . . .
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Template Sequence  IIEEPQRDVYWIHM. HADLRACFSTRLVDDITGYQTNLGQRLNTAGVLAPHVVLASDSDVFNLGGDLALFCQLIREGDRA
Template Known Secondary structure  TTTT.
TT


SB
T
SS
SSSSSB

B
T
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   18.20.........30. ........40.........50.........60.........70.........80.........90......
 
   77..80.........90.........100.........110.........120.........130.........140.........150...
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Query Sequence  . . . DPLSYDDPLRQITRMIQKFPKPIISMVEGSVWGGAFEMIMSSDLIIAASTSTFSMTPVNLGVPYNLVGIHNLTRDAG
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Template Sequence  RLLDYAQRCVRGVHAFHVGLGARAHSIALVQGNALGGGFEAALSCHTIIAEEGVMMGLPEVLFDLFPGMGAYSFMCQRIS
Template Known Secondary structure  TGGGTT

S
TSSTT

GGGGGT



SSTTTS
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   102.......110.........120.........130.........140.........150.........160.........170.........180.
 
   154.....160.........170.........180.........190.........200.........210.........220.........230...
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Query Sequence  FHIVKELIFTASPITAQRALAVGILNHVVEVEELEDFTLQMAHHISEKAPLAIAVIKEELRVLGEAHTMNSDEFERIQGM
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Template Sequence  AHLAQKIMLEGNLYSAEQLLGMGLVDRVVPRGQGVAAVEQVIRESK. RTPHAWAAMQQVREMTTAVPLEEMMRITEIWVD
Template Known Secondary structure 

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T.T
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   182.......190.........200.........210.........220....... ..230.........240.........250.........260
 
   234.....240.........250...
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Query Sequence  RRAVYDSEDYQEGMNAFLEK
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Template Sequence  TAMQLGEKSLRT. MDRLVRA
Template Known Secondary structure  TT

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   261........270.. .......
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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