 |
Job Description | P0ACC1 | Confidence | 99.08% | Date | Wed Jan 25 15:20:23 GMT 2012 |
Rank | 273 | Aligned Residues | 107 |
% Identity | 17% | Template | c3uzuA_ |
PDB info |
PDB header:transferase | Chain: A: PDB Molecule:ribosomal rna small subunit methyltransferase a; |
PDBTitle: the structure of the ribosomal rna small subunit methyltransferase a2 from burkholderia pseudomallei
|
Resolution | 1.75 Å |
|
 |
  |   |
83 | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | |
|
. | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | |
Predicted Secondary structure |   |
 |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  | . | . |
|
|
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
| . |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
Query Sequence |   |
F | V | S | P | A | T | L | I | P | R | P | D | T | E | C | L | V | E | Q | A | L | A | R | L | P | E | Q | P | C | R | I | L | D | L | G | T | G | T | G | A | I | A | L | A | L | A | S | E | . |
. |
R | P | D | C | E | I | I | A | V | D | R | M | P | D | A | V | S | L | A | Q | R | N | A | Q | H | L | A | I | K | . |
Query Conservation |   |
  |   |   |   |   |   |
|
|
|
|   |   |
|   |   |
|   |   |   |   |
|   |   |   |   |   |   |   |   |   |
|
|
|
|
|
|
|
|
|   |   |   |   |   |
|
|   |   | . | . |   |   |   |   |   |
|   |
|
|
|
|
|   |   |   |
|   |   |
|   |   |
|   |   |   |   |   |   |   | . |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
Template Conservation |   |
  |
|
|
|
|
|
|   |
|   |   |
|   |   |   |
|
|   |   |   | . | . | . |   |   |   |   |   |   |   |
|
|
|
|
|   |
|   |
|   |
|
|   |   |
|
|   |   |   |   |   |   |   |   |   |
|   |   |
|
|
|
|   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |
|   |
Template Sequence |   |
R | F | G | Q | N | F | L | V | D | H | G | V | I | D | A | I | V | A | A | I | . |
. |
. |
R | P | E | R | G | E | R | M | V | E | I | G | P | G | L | G | A | L | T | G | P | V | I | A | R | L | A | T | P | G | S | P | L | H | A | V | E | L | D | R | D | L | I | G | R | L | E | Q | R | F | G | E | L | L | E | L | H |
Template Known Secondary structure |   |
|
| S |
|
|  |  |
|
|  |  |  |  |  |  |  |  |  |  |  | . | . | . |
|
|
| T | T |
|  |  |  |  |  |
|
| T | T | S | T | T |  |  |  |  |  |  |  |  |
| B | T | T | B |
|  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  | G | G | G |  |  |  |  |
Template Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
| . | . | . |
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
15 | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | |
|
|
. | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . |
  |
  |   |
|
|
160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . |
Predicted Secondary structure |   |
. | . |
|
|
|
|
|
|
|
|  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |
|
|
|
|
|
|  |  |  |  |
Query SS confidence |   |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
. |
. |
N | I | H | I | L | Q | S | D | W | F | S | A | L | A | G | Q | Q | F | A | M | I | V | S | N | P | P | Y | I | D | E | Q | D | P |
Query Conservation |   |
. | . |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|
|   |
|
|
|   |   |   |   |   |   |   |
Alig confidence |   |
. | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|   |
|   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |
|
|   |
|
|
|
|   |
|
|
|   |
|
Template Sequence |   |
A | G | D | A | L | T | F | D | F | G | S | I | A | R | P | G | D | E | P | S | L | R | I | I | G | N | L | P | Y | N | I | S | S | P | L |
Template Known Secondary structure |   |
 | S |
| G | G | G |
|
| G | G | G | G | S |
| S | S | S | S |
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |
|
|  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
92 | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|