Job Description P0ACC1 Confidence 97.64% Date Wed Jan 25 15:20:23 GMT 2012 Rank 317 Aligned Residues 138 % Identity 15% Template c3g7uA_ PDB info PDB header:transferase Chain: A: PDB Molecule:cytosine-specific methyltransferase; PDBTitle: crystal structure of putative dna modification methyltransferase2 encoded within prophage cp-933r (e.coli) Resolution 1.75 Å

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		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.		.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.					.	.	.	.	.	.	180	.	.	.	.	.	.
Predicted Secondary structure																												.																																					.	.	.	.
Query SS confidence																												.																																					.	.	.	.
Query Sequence		R	I	L	D	L	G	T	G	T	G	A	I	A	L	A	L	A	S	E	R	P	D	C	E	I	I	.	A	V	D	R	M	P	D	A	V	S	L	A	Q	R	N	A	Q	H	L	A	I	K	N	I	H	I	L	Q	S	D	W	F	S	A	L	A	.	.	.	.	G	Q	Q	F	A	M	I	V	S	N	P	P	Y
Query Conservation																												.																																					.	.	.	.
Alig confidence																					.	.						.																																					.	.	.	.
Template Conservation																					.	.
Template Sequence		N	V	I	D	L	F	S	G	V	G	G	L	S	L	G	A	A	R	A	.	.	G	F	D	V	K	M	A	V	E	I	D	Q	H	A	I	N	T	H	A	I	N	F	P	R	S	L	H	V	Q	E	D	V	S	L	L	N	A	E	I	I	K	G	F	F	K	N	D	M	P	I	D	G	I	I	G	G	P	P	C
Template Known Secondary structure							T		T	T	S										.	.	T									S													T	T	S							G	G	G												S
Template Predicted Secondary structure																					.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20			.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240									.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																								.	.	.	.	.	.	.	.
Query SS confidence																																																								.	.	.	.	.	.	.	.
Query Sequence		I	D	E	Q	D	P	H	L	Q	Q	G	D	V	R	F	E	P	L	T	A	L	V	A	A	D	S	G	M	A	D	I	V	H	I	I	E	Q	S	R	N	A	L	V	S	G	G	F	L	L	L	E	H	G	W	.	.	.	.	.	.	.	.	Q	Q	G	E	A	V	R	Q	A	F	I	L	A	G	Y	H	D	V
Query Conservation																																																								.	.	.	.	.	.	.	.
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.									.	.	.	.	.	.	.	.
Template Conservation						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Template Sequence		Q	G	F	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	D	S	R	N	Q	L	Y	M	H	F	Y	R	L	V	S	E	L	Q	P	L	.	F	F	L	A	E	N	V	P	G	I	M	Q	E	K	Y	S	G	I	R	N	K	A	F	N	L	V	S	G	D	Y	D	I	L	D
Template Known Secondary structure			T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					S	.								T	T	T	T		G	G	G													T	T
Template Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Template SS confidence
		80	.	.	.																					.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.		.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
		259	260	.				.	.	.				.	.	.	.	.	270	.	.
Predicted Secondary structure					.	.	.				.	.	.
Query SS confidence					.	.	.				.	.	.
Query Sequence		E	T	C	.	.	.	R	D	Y	.	.	.	G	D	N	E	R	V	T	L
Query Conservation					.	.	.				.	.	.
Alig confidence					.	.	.				.	.	.
Template Conservation
Template Sequence		P	I	K	V	K	A	S	D	Y	G	A	P	T	I	R	T	R	Y	F	F
Template Known Secondary structure							G	G	G	G	T		S	B
Template Predicted Secondary structure
Template SS confidence
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions