Job Description P0ACC1 Confidence 99.33% Date Wed Jan 25 15:20:23 GMT 2012 Rank 241 Aligned Residues 170 % Identity 15% Template c3bwbA_ PDB info PDB header:transferase Chain: A: PDB Molecule:spermidine synthase; PDBTitle: crystal structure of the apo form of spermidine synthase from2 trypanosoma cruzi at 2.5 a resolution Resolution 2.50 Å

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		67	.	.	70	.	.	.	.	.	.					.	.	.	80	.	.	.	.	.	.	.	.	.	90					.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
Predicted Secondary structure												.	.	.	.															.	.	.	.
Query SS confidence												.	.	.	.															.	.	.	.
Query Sequence		P	I	A	H	L	T	G	V	R	E	.	.	.	.	F	W	S	L	P	L	F	V	S	P	A	T	L	I	.	.	.	.	P	R	P	D	T	E	C	L	V	E	Q	A	L	A	R	L	P	E	Q	P	C	R	I	L	D	L	G	T	G	T	G	A	I	A	L	A	L	A	S	E	R	P	D	C	E	I	I	A
Query Conservation												.	.	.	.															.	.	.	.
Alig confidence												.	.	.	.															.	.	.	.																		.
Template Conservation																																																			.
Template Sequence		K	F	Q	H	L	T	I	F	E	S	D	P	K	G	P	W	G	T	V	X	A	L	D	G	C	I	Q	V	T	D	Y	D	E	F	V	Y	H	E	V	L	G	H	T	S	L	C	S	H	P	.	K	P	E	R	V	L	I	I	G	G	G	D	G	G	V	L	R	E	V	L	R	H	G	T	V	E	H	C	D	L
Template Known Secondary structure		S	S	S									T	T	S	S								T	T						T	T	T														T	T	S	S	.											T	T	S							T	T		T	T
Template Predicted Secondary structure																																																			.
Template SS confidence
		46	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.		.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.
		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.					.	.	.	160	.	.	.	.	.	.	.	.	.	170				.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
Predicted Secondary structure																				.	.	.	.															.	.	.
Query SS confidence																				.	.	.	.															.	.	.
Query Sequence		V	D	R	M	P	D	A	V	S	L	A	Q	R	N	A	Q	H	L	.	.	.	.	A	I	K	N	I	H	I	L	Q	S	D	W	F	S	.	.	.	A	L	A	G	Q	Q	F	A	M	I	V	S	N	P	P	Y	I	D	E	Q	D	P	H	L	Q	Q	G	D	V	R	F	E	P	L	T	A	L	V	A	A	D
Query Conservation																				.	.	.	.															.	.	.
Alig confidence																				.	.	.	.															.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	D	I	D	G	E	V	X	E	Q	S	K	Q	H	F	P	Q	I	S	R	S	L	A	D	P	R	A	T	V	R	V	G	D	G	L	A	F	V	R	Q	T	P	D	N	T	Y	D	V	V	I	I	D	T	T	D	P	A	S	K	L	F	G	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure				S																	G	G	G	G		T	T						S								T	S		T	T										S						S	S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
		212	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.						.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
Predicted Secondary structure																													.	.	.	.	.
Query SS confidence																													.	.	.	.	.
Query Sequence		S	G	M	A	D	I	V	H	I	I	E	Q	S	R	N	A	L	V	S	G	G	F	L	L	L	E	H	.	.	.	.	.	G	W	Q	Q	G	E	A	V	R	Q	A	F	I	L	A	G	Y	H	D	V	E	T	C
Query Conservation																													.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.																					.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	A	F	Y	K	D	V	L	R	I	L	K	P	D	G	I	C	C	N	Q	G	E	S	I	W	L	D	L	E	L	I	E	K	X	S	R	F	I	R	E	T	G	F	A	S	V	Q	Y	A
Template Known Secondary structure		.	.	.	.	.	.	.																							T	T	T																T		S
Template Predicted Secondary structure		.	.	.	.	.	.	.
Template SS confidence
									191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions