Email l.a.kelley@imperial.ac.uk Description P0A6Y1 Date Thu Jan 5 11:04:12 GMT 2012 Unique Job ID 9eb073e6970b4ce2

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1owfb_ 99.9 99 Fold:IHF-like DNA-binding proteins Superfamily:IHF-like DNA-binding proteins Family:Prokaryotic DNA-bending protein 2 c2iifA_ 99.9 33 PDB header:recombination/dna Chain: A: PDB Molecule:integration host factor; PDBTitle: single chain integration host factor mutant protein (scihf2-2 k45ae) in complex with dna 3 d1p71a_ 99.9 33 Fold:IHF-like DNA-binding proteins Superfamily:IHF-like DNA-binding proteins Family:Prokaryotic DNA-bending protein 4 c3c4iA_ 99.9 33 PDB header:dna binding protein Chain: A: PDB Molecule:dna-binding protein hu homolog; PDBTitle: crystal structure analysis of n terminal region containing the2 dimerization domain and dna binding domain of hu protein(histone like3 protein-dna binding) from mycobacterium tuberculosis [h37rv] 5 d1owfa_ 99.9 32 Fold:IHF-like DNA-binding proteins Superfamily:IHF-like DNA-binding proteins Family:Prokaryotic DNA-bending protein 6 c2np2B_ 99.9 32 PDB header:dna binding protein/dna Chain: B: PDB Molecule:hbb; PDBTitle: hbb-dna complex 7 d1exea_ 99.9 28 Fold:IHF-like DNA-binding proteins Superfamily:IHF-like DNA-binding proteins Family:Prokaryotic DNA-bending protein 8 d1huua_ 99.8 38 Fold:IHF-like DNA-binding proteins Superfamily:IHF-like DNA-binding proteins Family:Prokaryotic DNA-bending protein 9 d1mula_ 99.7 29 Fold:IHF-like DNA-binding proteins Superfamily:IHF-like DNA-binding proteins Family:Prokaryotic DNA-bending protein 10 d2o97b1 99.7 32 Fold:IHF-like DNA-binding proteins Superfamily:IHF-like DNA-binding proteins Family:Prokaryotic DNA-bending protein 11 d1b8za_ 99.6 45 Fold:IHF-like DNA-binding proteins Superfamily:IHF-like DNA-binding proteins Family:Prokaryotic DNA-bending protein 12 d1i27a_ 43.3 15 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:C-terminal domain of the rap74 subunit of TFIIF 13 d1dula_ 35.6 23 Fold:Signal peptide-binding domain Superfamily:Signal peptide-binding domain Family:Signal peptide-binding domain 14 d1o17a1 33.3 20 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 15 c1nriA_ 31.5 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein hi0754; PDBTitle: crystal structure of putative phosphosugar isomerase hi0754 from2 haemophilus influenzae 16 d1nria_ 31.5 16 Fold:SIS domain Superfamily:SIS domain Family:mono-SIS domain 17 d1nh2d1 29.9 16 Fold:Transcription factor IIA (TFIIA), alpha-helical domain Superfamily:Transcription factor IIA (TFIIA), alpha-helical domain Family:Transcription factor IIA (TFIIA), alpha-helical domain 18 d1hq1a_ 29.7 26 Fold:Signal peptide-binding domain Superfamily:Signal peptide-binding domain Family:Signal peptide-binding domain 19 d1brwa1 28.5 17 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 20 d1qzxa2 28.1 29 Fold:Signal peptide-binding domain Superfamily:Signal peptide-binding domain Family:Signal peptide-binding domain 21 c3cvjB_ not modelled 27.4 15 PDB header:isomerase Chain: B: PDB Molecule:putative phosphoheptose isomerase; PDBTitle: crystal structure of a putative phosphoheptose isomerase (bh3325) from2 bacillus halodurans c-125 at 2.00 a resolution 22 c2jqeA_ not modelled 25.2 32 PDB header:signaling protein Chain: A: PDB Molecule:signal recognition 54 kda protein; PDBTitle: soution structure of af54 m-domain 23 d2ffha2 not modelled 21.3 32 Fold:Signal peptide-binding domain Superfamily:Signal peptide-binding domain Family:Signal peptide-binding domain 24 c1o17A_ not modelled 19.3 20 PDB header:transferase Chain: A: PDB Molecule:anthranilate phosphoribosyltransferase; PDBTitle: anthranilate phosphoribosyl-transferase (trpd) 25 d1khda1 not modelled 18.1 10 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 26 c3tsuA_ not modelled 17.3 30 PDB header:transferase Chain: A: PDB Molecule:transcriptional regulatory protein; PDBTitle: crystal structure of e. coli hypf with amp-pnp and carbamoyl phosphate 27 d1nvpd1 not modelled 16.8 18 Fold:Transcription factor IIA (TFIIA), alpha-helical domain Superfamily:Transcription factor IIA (TFIIA), alpha-helical domain Family:Transcription factor IIA (TFIIA), alpha-helical domain 28 c2k6sB_ not modelled 13.9 16 PDB header:protein transport Chain: B: PDB Molecule:rab11fip2 protein; PDBTitle: structure of rab11-fip2 c-terminal coiled-coil domain 29 d2tpta1 not modelled 12.9 7 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 30 d1njra_ not modelled 12.3 11 Fold:Macro domain-like Superfamily:Macro domain-like Family:Macro domain 31 d2o4ta1 not modelled 12.2 15 Fold:Left-handed superhelix Superfamily:BH3980-like Family:BH3980-like 32 d1vola2 not modelled 11.9 15 Fold:Cyclin-like Superfamily:Cyclin-like Family:Transcription factor IIB (TFIIB), core domain 33 d1ussa_ not modelled 11.3 15 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Linker histone H1/H5 34 c3kfoA_ not modelled 10.9 9 PDB header:protein transport Chain: A: PDB Molecule:nucleoporin nup133; PDBTitle: crystal structure of the c-terminal domain from the nuclear pore2 complex component nup133 from saccharomyces cerevisiae 35 d1ee8a1 not modelled 10.7 11 Fold:S13-like H2TH domain Superfamily:S13-like H2TH domain Family:Middle domain of MutM-like DNA repair proteins 36 c3thgA_ not modelled 10.3 11 PDB header:protein binding Chain: A: PDB Molecule:ribulose bisphosphate carboxylase/oxygenase activase 1, PDBTitle: crystal structure of the creosote rubisco activase c-domain 37 d1uoua1 not modelled 10.2 15 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 38 c2yskA_ not modelled 10.1 9 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein ttha1432; PDBTitle: crystal structure of a hypothetical protein ttha1432 from thermus2 thermophilus 39 d1tdza1 not modelled 9.7 7 Fold:S13-like H2TH domain Superfamily:S13-like H2TH domain Family:Middle domain of MutM-like DNA repair proteins 40 d1dpua_ not modelled 9.3 20 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:C-terminal domain of RPA32 41 c1dpuA_ not modelled 9.3 20 PDB header:dna binding protein Chain: A: PDB Molecule:replication protein a (rpa32) c-terminal domain; PDBTitle: solution structure of the c-terminal domain of human rpa322 complexed with ung2(73-88) 42 d1soua_ not modelled 9.1 16 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:Methenyltetrahydrofolate synthetase 43 d1k82a1 not modelled 9.0 14 Fold:S13-like H2TH domain Superfamily:S13-like H2TH domain Family:Middle domain of MutM-like DNA repair proteins 44 d1z67a1 not modelled 8.9 13 Fold:YidB-like Superfamily:YidB-like Family:YidB-like 45 c2v3cC_ not modelled 8.9 29 PDB header:signaling protein Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the srp54-srp19-7s.s srp rna complex2 of m. jannaschii 46 c2vfyA_ not modelled 8.6 22 PDB header:hydrolase Chain: A: PDB Molecule:akap18 delta; PDBTitle: akap18 delta central domain 47 d1qb2a_ not modelled 8.5 20 Fold:Signal peptide-binding domain Superfamily:Signal peptide-binding domain Family:Signal peptide-binding domain 48 d1r2za1 not modelled 8.2 19 Fold:S13-like H2TH domain Superfamily:S13-like H2TH domain Family:Middle domain of MutM-like DNA repair proteins 49 d1x94a_ not modelled 8.2 21 Fold:SIS domain Superfamily:SIS domain Family:mono-SIS domain 50 c2kloA_ not modelled 8.1 14 PDB header:cell cycle Chain: A: PDB Molecule:dna replication factor cdt1; PDBTitle: structure of the cdt1 c-terminal domain 51 d1tk9a_ not modelled 8.0 28 Fold:SIS domain Superfamily:SIS domain Family:mono-SIS domain 52 c1khdD_ not modelled 7.8 10 PDB header:transferase Chain: D: PDB Molecule:anthranilate phosphoribosyltransferase; PDBTitle: crystal structure analysis of the anthranilate2 phosphoribosyltransferase from erwinia carotovora at 1.93 resolution (current name, pectobacterium carotovorum) 53 c3g2bA_ not modelled 7.8 18 PDB header:biosynthetic protein Chain: A: PDB Molecule:coenzyme pqq synthesis protein d; PDBTitle: crystal structure of pqqd from xanthomonas campestris 54 d1k3xa1 not modelled 7.6 15 Fold:S13-like H2TH domain Superfamily:S13-like H2TH domain Family:Middle domain of MutM-like DNA repair proteins 55 c1nvpD_ not modelled 7.5 18 PDB header:transcription/dna Chain: D: PDB Molecule:transcription initiation factor iia gamma chain; PDBTitle: human tfiia/tbp/dna complex 56 d2fqla1 not modelled 7.5 22 Fold:N domain of copper amine oxidase-like Superfamily:Frataxin/Nqo15-like Family:Frataxin-like 57 c1otpA_ not modelled 7.4 7 PDB header:phosphorylase Chain: A: PDB Molecule:thymidine phosphorylase; PDBTitle: structural and theoretical studies suggest domain movement produces an2 active conformation of thymidine phosphorylase 58 c1tr8A_ not modelled 7.2 21 PDB header:chaperone Chain: A: PDB Molecule:conserved protein (mth177); PDBTitle: crystal structure of archaeal nascent polypeptide-associated complex2 (aenac) 59 c2i2aA_ not modelled 7.1 12 PDB header:transferase Chain: A: PDB Molecule:probable inorganic polyphosphate/atp-nad kinase 1; PDBTitle: crystal structure of lmnadk1 from listeria monocytogenes 60 c3dm5A_ not modelled 6.8 35 PDB header:rna binding protein, transport protein Chain: A: PDB Molecule:signal recognition 54 kda protein; PDBTitle: structures of srp54 and srp19, the two proteins assembling2 the ribonucleic core of the signal recognition particle3 from the archaeon pyrococcus furiosus. 61 d1aipc1 not modelled 6.5 17 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:TS-N domain 62 d1hh2p4 not modelled 6.5 19 Fold:Transcription factor NusA, N-terminal domain Superfamily:Transcription factor NusA, N-terminal domain Family:Transcription factor NusA, N-terminal domain 63 d1mzba_ not modelled 6.4 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:FUR-like 64 d1aisb2 not modelled 6.2 16 Fold:Cyclin-like Superfamily:Cyclin-like Family:Transcription factor IIB (TFIIB), core domain 65 d2cp9a1 not modelled 6.2 11 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:TS-N domain 66 c3eyyA_ not modelled 6.1 19 PDB header:transport Chain: A: PDB Molecule:putative iron uptake regulatory protein; PDBTitle: structural basis for the specialization of nur, a nickel-2 specific fur homologue, in metal sensing and dna3 recognition 67 d1z6ra1 not modelled 6.0 21 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:ROK associated domain 68 c3jx9B_ not modelled 5.9 19 PDB header:isomerase Chain: B: PDB Molecule:putative phosphoheptose isomerase; PDBTitle: crystal structure of putative phosphoheptose isomerase2 (yp_001815198.1) from exiguobacterium sp. 255-15 at 1.95 a resolution 69 c2az1B_ not modelled 5.8 17 PDB header:transferase Chain: B: PDB Molecule:nucleoside diphosphate kinase; PDBTitle: structure of a halophilic nucleoside diphosphate kinase2 from halobacterium salinarum 70 c3a4cA_ not modelled 5.8 14 PDB header:cell cycle, replication Chain: A: PDB Molecule:dna replication factor cdt1; PDBTitle: crystal structure of cdt1 c terminal domain 71 c2d4gA_ not modelled 5.7 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein bsu11850; PDBTitle: structure of yjcg protein, a putative 2'-5' rna ligase from2 bacillus subtilis 72 c2o03A_ not modelled 5.7 23 PDB header:gene regulation Chain: A: PDB Molecule:probable zinc uptake regulation protein furb; PDBTitle: crystal structure of furb from m. tuberculosis- a zinc uptake2 regulator 73 c2dsjA_ not modelled 5.6 13 PDB header:transferase Chain: A: PDB Molecule:pyrimidine-nucleoside (thymidine) phosphorylase; PDBTitle: crystal structure of project id tt0128 from thermus thermophilus hb8 74 c2fu4B_ not modelled 5.5 19 PDB header:dna binding protein Chain: B: PDB Molecule:ferric uptake regulation protein; PDBTitle: crystal structure of the dna binding domain of e.coli fur (ferric2 uptake regulator) 75 c1brwB_ not modelled 5.4 17 PDB header:transferase Chain: B: PDB Molecule:protein (pyrimidine nucleoside phosphorylase); PDBTitle: the crystal structure of pyrimidine nucleoside2 phosphorylase in a closed conformation 76 d1krha1 not modelled 5.4 35 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 77 c3mwmA_ not modelled 5.3 16 PDB header:transcription Chain: A: PDB Molecule:putative metal uptake regulation protein; PDBTitle: graded expression of zinc-responsive genes through two regulatory2 zinc-binding sites in zur 78 d2elca1 not modelled 5.3 0 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 79 c2xigA_ not modelled 5.3 6 PDB header:transcription Chain: A: PDB Molecule:ferric uptake regulation protein; PDBTitle: the structure of the helicobacter pylori ferric uptake2 regulator fur reveals three functional metal binding sites 80 d1v8ga1 not modelled 5.3 0 Fold:Methionine synthase domain-like Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 81 c1vquB_ not modelled 5.3 10 PDB header:transferase Chain: B: PDB Molecule:anthranilate phosphoribosyltransferase 2; PDBTitle: crystal structure of anthranilate phosphoribosyltransferase 22 (17130499) from nostoc sp. at 1.85 a resolution 82 c3mzyA_ not modelled 5.2 11 PDB header:rna binding protein Chain: A: PDB Molecule:rna polymerase sigma-h factor; PDBTitle: the crystal structure of the rna polymerase sigma-h factor from2 fusobacterium nucleatum to 2.5a 83 c2w2mP_ not modelled 5.2 33 PDB header:hydrolase/receptor Chain: P: PDB Molecule:proprotein convertase subtilisin/kexin type 9; PDBTitle: wt pcsk9-deltac bound to wt egf-a of ldlr 84 c2pmwA_ not modelled 5.2 33 PDB header:hydrolase Chain: A: PDB Molecule:proprotein convertase subtilisin/kexin type 9; PDBTitle: the crystal structure of proprotein convertase subtilisin2 kexin type 9 (pcsk9) 85 c2p4eP_ not modelled 5.2 33 PDB header:hydrolase Chain: P: PDB Molecule:proprotein convertase subtilisin/kexin type 9; PDBTitle: crystal structure of pcsk9 86 c2q3vB_ not modelled 5.1 14 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:protein at2g34160; PDBTitle: ensemble refinement of the protein crystal structure of gene product2 from arabidopsis thaliana at2g34160