Job Description P31449 Confidence 77.80% Date Thu Jan 5 11:47:40 GMT 2012 Rank 291 Aligned Residues 144 % Identity 15% Template c1zreB_ PDB info PDB header:gene regulation/dna Chain: B: PDB Molecule:catabolite gene activator; PDBTitle: 4 crystal structures of cap-dna with all base-pair2 substitutions at position 6, cap-[6g;17c]icap38 dna Resolution 2.80 Å

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		63	.	.	.	.	.	.	70	.	.	.	.	.	.			.	.	.	80	.	.	.	.				.	.	.	.	.	90	.	.	.	.				.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.
Predicted Secondary structure																.	.									.	.	.											.	.	.
Query SS confidence																.	.									.	.	.											.	.	.
Query Sequence		V	A	V	Y	T	V	Q	G	C	G	K	I	L	L	.	.	K	N	G	E	Q	I	T	L	.	.	.	H	G	N	C	I	I	F	L	K	P	.	.	.	M	D	I	H	S	Y	H	C	E	G	L	V	W	E	Q	Y	W	M	E	F	T	P	T	S	M	M	D	I	P	V	G	Q	Q	S	V	I	Y	N	G	E
Query Conservation																.	.									.	.	.											.	.	.
Alig confidence																.	.									.	.	.											.	.	.																																		.	.	.	.	.	.
Template Conservation																																																																											.	.	.	.	.	.
Template Sequence		T	L	Y	Y	I	V	K	G	S	V	A	V	L	I	K	D	E	E	G	K	E	M	I	L	S	Y	L	N	Q	G	D	F	I	G	E	L	G	L	F	E	E	G	Q	E	R	S	A	W	V	R	A	K	T	A	C	E	V	A	E	I	S	Y	K	K	F	R	Q	L	I	Q	V	N	P	.	.	.	.	.	.	D
Template Known Secondary structure									S									T	T											T	T				S		T	T	S	S	S	T	T		B			S					S	S																				T	.	.	.	.	.	.
Template Predicted Secondary structure																																																																											.	.	.	.	.	.
Template SS confidence
		38	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110							.
		135	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	Y	N	Q	E	L	T	E	V	A	E	L	I	T	S	P	E	A	I	K	N	N	L	A	V	A	F	L	T	K	I	I	Y	Q	W	I	C	L	M	Y	A	D	G	K	K	D	P	Q	R	R	Q	I	E	K	L	I	A	T	L	H	A	S	L	Q	Q	R	W	S	V	A	D	M	A	A	T	I	P	C	S	E
Query Conservation
Alig confidence																																																		.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																		.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	L	M	R	L	S	A	Q	M	A	R	R	L	Q	V	T	S	E	K	V	G	N	L	A	F	L	D	V	T	G	R	I	A	Q	T	L	L	N	L	A	K	Q	P	D	A	M	T	H	.	.	.	.	.	.	.	.	.	.	.	P	D	G	M	Q	I	K	I	T	R	Q	E	I	G	Q	I	V	G	C	S	R
Template Known Secondary structure																																									T	T	S	T	T					.	.	.	.	.	.	.	.	.	.	.	T	T																T	S
Template Predicted Secondary structure																																																		.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.												160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
		215	.	.	.	.	220	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	W	L	R	R	L	F	L	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	T	V	G	R	I	L	K	M
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		181	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions