Job Description P04995 Confidence 97.36% Date Thu Jan 5 10:58:34 GMT 2012 Rank 50 Aligned Residues 131 % Identity 19% Template c2hbkA_ PDB info PDB header:hydrolase, gene regulation Chain: A: PDB Molecule:exosome complex exonuclease rrp6; PDBTitle: structure of the yeast nuclear exosome component, rrp6p,2 reveals an interplay between the active site and the hrdc3 domain; protein in complex with mn Resolution 2.25 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.			.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure																							.	.
Query SS confidence																							.	.
Query Sequence		Q	Q	S	T	F	L	F	H	D	Y	E	T	F	G	T	H	P	A	L	D	R	.	.	P	A	Q	F	A	A	I	R	T	D	S	E	F	N	V	I	G	E	P	E	V	F	Y	C	K	P	A	D	D	Y	L	P	Q	P	G	A	V	L	I	T	G	I	T	P	Q	E	A	R	A	K	G	E	N	E	A	A	F
Query Conservation																							.	.
Alig confidence																							.	.						.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																														.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	N	T	K	E	I	A	V	D	L	E	H	H	D	Y	R	S	Y	Y	G	I	V	C	L	M	Q	I	S	.	.	.	.	T	R	E	R	D	Y	L	V	D	T	L	K	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	E	N
Template Known Secondary structure		T	T		S											S	S	S	S	S										.	.	.	.		S	S							T	T	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	T
Template Predicted Secondary structure																														.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.					.	.	260	.	.	.	.	.	.	.	.	.	270																																	.	.	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	R	I	H	S	L	F	T	V	P	K	T	C	I	L	G	Y	N	N	V	R	F	D	D	E	V	T	R	N	I	F	Y	R	N	F	Y	D	P	Y	A	W	S	W	Q	H	D	N	S	R	W	D	L	L	D	V	M	R	A	C	Y	A	L	R	P	E	G	I	N	W	P	E	N	D	D	G	L	P	S	F
Query Conservation
Alig confidence																						.												.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																						.												.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	H	I	L	N	E	V	F	T	N	P	S	I	V	K	V	F	H	G	A	.	F	M	D	I	I	W	L	Q	R	D	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	L	Y	V	V	G	L	F	D	T	Y	H	A	S	K	A	I	.	.	.	.	.	.	.	.	.	.	.	.	G	L	P	R	H
Template Known Secondary structure		G	G	G	G					T		T	T	S					S	S		.												.	.	.	.	.	.	.	.	.	.	.	.	.	.					S	S												.	.	.	.	.	.	.	.	.	.	.	.	T		S
Template Predicted Secondary structure																						.												.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		274	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.		.	.	.	.	.	.	300	.	.	.	.															.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.													.	.	.	.	.
		165	.	.	.	.	170	.	.	.		.	.	.	.	.	.	180	.	.																	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
Predicted Secondary structure											.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence											.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	L	E	H	L	T	K	A	N	.	G	I	E	H	S	N	A	H	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	M	A	D	V	Y	A	T	I	A	M	A	K	L	V	K	T	R
Query Conservation											.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	L	A	Y	L	L	E	N	F	A	N	F	K	T	S	K	K	Y	Q	L	A	D	W	R	I	R	P	L	S	K	P	M	T	A	A	A	R	A	D	T	H	F	L	L	N	I	Y	D	Q	L	R	N	K
Template Known Secondary structure		S																T	T	T	T	S		T	T		S	S															T
Template Predicted Secondary structure
Template SS confidence
		327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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