 |
Job Description | P38684 | Confidence | 39.48% | Date | Thu Jan 5 11:58:14 GMT 2012 |
Rank | 314 | Aligned Residues | 49 |
% Identity | 20% | Template | d1stza1 |
SCOP info | DNA/RNA-binding 3-helical bundle
| "Winged helix" DNA-binding domain
| Heat-inducible transcription repressor HrcA, N-terminal domain
|
Resolution | 2.20 |
|
  |   |
157 | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | |
|
|
. | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
K | L | T | R | A | E | Y | E | M | L | V | A | F | V | T | . |
. |
. |
N | P | G | E | I | L | S | R | E | R | L | L | R | M | L | S | A | R | R | V | E | N | P | D | L | R | T | V | D | V | L | I | R | R | L | R | H | K |
Query Conservation |   |
  |
|   |   |   |
|   |   |   |
|   |   |
|   |   | . | . | . |   |   |   |   |
|   |
|   |   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |
|
|   |   |   |
|   |
|
|
|   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|
|   |
|
|   |   |
|
|   |   |
|   |   |   |   |   |   |   |
|   |
|
|
|   |   |
|
|
|
|   |   | . | . | . | . |   |   |   |
|
|   |   |
|
|
|   |   |
|   |   |
|
|   |   |
Template Sequence |   |
K | L | N | D | R | Q | R | K | V | L | Y | C | I | V | R | E | Y | I | E | N | K | K | P | V | S | S | Q | R | V | L | E | V | S | . |
. |
. |
. |
N | I | E | F | S | S | A | T | I | R | N | D | M | K | K | L | E | Y | L |
Template Known Secondary structure |   |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| S |
| B |
|  |  |  |  |  |  |  | S | . | . | . | . |
|
|
| S |
|  |  |  |  |  |  |  |  |  |  |  |  |  | T |
Template Predicted Secondary structure |   |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  | . | . | . | . |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
14 | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | |
|
|
|
. | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|