Job Description P38684 Confidence 84.85% Date Thu Jan 5 11:58:14 GMT 2012 Rank 172 Aligned Residues 188 % Identity 7% Template c3n75E_ PDB info PDB header:lyase Chain: E: PDB Molecule:lysine decarboxylase, inducible; PDBTitle: x-ray crystal structure of the escherichia coli inducible lysine2 decarboxylase ldci Resolution 2.00 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.					.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.		.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.																														.
Query SS confidence																			.	.	.	.																														.
Query Sequence		M	P	H	H	I	V	I	V	E	D	E	P	V	T	Q	A	R	.	.	.	.	L	Q	S	Y	F	T	Q	E	G	Y	T	V	S	V	T	A	S	G	A	G	L	R	E	I	M	Q	N	Q	S	.	V	D	L	I	L	L	D	I	N	L	P	D	E	N	G	L	M	L	T	R	A	L	R	E	R	S	T	V	G
Query Conservation																			.	.	.	.																														.
Alig confidence																			.	.	.	.																														.																							.	.
Template Conservation																																																																											.	.
Template Sequence		M	N	V	I	A	I	L	N	H	M	G	V	Y	F	K	E	E	P	I	R	E	L	H	R	A	L	E	R	L	N	F	Q	I	V	Y	P	N	D	R	D	D	L	L	K	L	I	E	N	N	A	R	L	C	G	V	I	F	D	W	D	K	Y	N	L	E	L	C	E	E	I	S	K	M	.	.	N	E	N	L	P
Template Known Secondary structure												S																		T	T							S	S												T	T																							.	.		T	T
Template Predicted Secondary structure																																																																											.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.			.	.	.	.	.
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.		.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.				.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
Predicted Secondary structure																														.																					.	.	.																									.	.	.	.
Query SS confidence																														.																					.	.	.																									.	.	.	.
Query Sequence		I	I	L	V	T	G	R	S	D	R	I	D	R	I	V	G	L	E	M	G	A	D	D	Y	V	T	K	P	.	L	E	L	R	E	L	V	V	R	V	K	N	L	L	W	R	I	D	L	A	.	.	.	R	Q	A	Q	P	H	T	Q	D	N	C	Y	R	F	A	G	Y	C	L	N	V	S	R	H	.	.	.	.
Query Conservation																														.																					.	.	.																									.	.	.	.
Alig confidence																														.																					.	.	.																									.	.	.	.
Template Conservation
Template Sequence		L	Y	A	F	A	N	T	Y	S	T	L	D	V	S	L	N	D	L	R	L	Q	I	S	F	F	E	Y	A	L	G	A	A	E	D	I	A	N	K	I	K	Q	T	T	D	E	Y	I	N	T	I	L	P	P	L	T	K	A	L	F	K	Y	V	R	E	G	K	Y	T	F	C	T	P	G	H	M	G	G	T	A	F
Template Known Secondary structure								T	T					G	G	G	T	T	S											T	T																					S																		S		S	S	T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
											148	.	150	.	.	.	.	.	.	.	.	.	160	.		.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
Predicted Secondary structure		.	.	.	.	.	.	.	.	.															.
Query SS confidence		.	.	.	.	.	.	.	.	.															.
Query Sequence		.	.	.	.	.	.	.	.	.	T	L	E	R	D	G	E	P	I	K	L	T	R	A	.	E	Y	E	M	L	V	A	F	V	T	N	P	G	E	I	L	S	R	E	R	L	L	R	M	L	S	A	R	R
Query Conservation		.	.	.	.	.	.	.	.	.															.
Alig confidence		.	.	.	.	.	.	.	.	.															.
Template Conservation
Template Sequence		Q	K	S	P	V	G	S	L	F	Y	D	F	F	G	P	N	T	M	K	S	D	I	S	I	S	V	S	E	L	G	S	L	L	D	H	S	G	P	H	K	E	A	E	Q	Y	I	A	R	V	F	N	A	D
Template Known Secondary structure			T	S																	T				T	T	S	G	G	G		B	T	T	T	T	B	T														T		S
Template Predicted Secondary structure
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions