Return to main results Retrieve Phyre Job Id

Job DescriptionP38684
Confidence39.66%DateThu Jan 5 11:58:14 GMT 2012
Rank313Aligned Residues109
% Identity21%Templatec3e18A_
PDB info PDB header:oxidoreductaseChain: A: PDB Molecule:oxidoreductase; PDBTitle: crystal structure of nad-binding protein from listeria innocua
Resolution1.95 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1.. ......10.........20.........30 .........40.........50.........60.........70........
Predicted Secondary structure 


.





.






























Query SS confidence 


.


























.















































Query Sequence  MPH. HIVIVEDEPVTQARLQSYFTQEGYTVS. VTASGAGLREIMQNQSVDLILLDINLPDENGLMLTRALRERSTVGIIL
Query Conservation 
  . 






      
   
   
  
 . 
    


        



 
  

   
              

 
Alig confidence 


.


























.
















.........










.









Template Conservation 

 


 


 
  
  
   
       



 
              .........       


 .   

 
 
 
Template Sequence  LKKYQLVIVGYGGMGSYHVTLASAADNLEVHGVFDILAEKREAAAQKGL. . . . . . . . . KIYESYEAVLA. DEKVDAVLIA
Template Known Secondary structure 




STSTT
SSTTT
.........
B
S
.
TT


Template Predicted Secondary structure 














.........

.




Template SS confidence 















































































   1........10.........20.........30.........40......... 50.........60 .........70
 
   7980.........90.........100... ......110.........
Predicted Secondary structure 










..



Query SS confidence 
























. .















Query Sequence  VTGRSDRIDRIVGLEMGADDYVTKP. . LELRELVVRVKNLLWR
Query Conservation 

              

  

 

..     
   
  
   
Alig confidence 
























..















Template Conservation 

   
      

  



  


 
    
   
   
   
Template Sequence  TPNDSHKELAISALEAGKHVVCEKPVTMTSEDLLAIMDVAKRV
Template Known Secondary structure  S
GGGTT
SS

SS
Template Predicted Secondary structure 











Template SS confidence 










































   71........80.........90.........100.........110...
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions