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Job DescriptionP38684
Confidence97.24%DateThu Jan 5 11:58:14 GMT 2012
Rank133Aligned Residues187
% Identity13%Templatec2vycA_
PDB info PDB header:lyaseChain: A: PDB Molecule:biodegradative arginine decarboxylase; PDBTitle: crystal structure of acid induced arginine decarboxylase2 from e. coli
Resolution2.4 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   4.....10..... ....20.........30.........40...... ...50.........60. ........
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Query Sequence  HIVIVEDEPVTQ. . . . . . . . ARLQSYFTQEGYTVSVTASGAGLREIMQNQS. VDLILLDINLPDENG. . . . LMLTRALR.
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Template Sequence  KVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSNEAIDCLMFSYQMEHPDEHQNVRQLIGKLHE
Template Known Secondary structure 

TTSTTSTT
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   2.......10.........20.........30.........40.........50.........60.........70.........80.
 
   70.........80..... ....90.........100.........110.........120... ......130.........140....
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Query Sequence  ERSTVGIILVTGRSDR. IDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLA. . . . RQAQPHTQDNCYRFAGYCLNV
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Template Sequence  RQQNVPVFLLGDREKALAAMDRDLLELVDEFAWILEDTADFIAGRAVAAMTRYRQQLLPPLFSALMKYSDIHEYSWAAPG
Template Known Secondary structure  STT


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   82.......90.........100.........110.........120.........130.........140.........150.........160.
 
   145.. ..150.........160. ........170.........180.........190
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Query Sequence  SRH. . . . . . . . . . . . . TLERDGEPIKLTRA. EYEMLVAFVTNPGEILSRERLLRMLSARR
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Template Sequence  HQGGVGFTKTPAGRFYHDYYGENLFRTDMGIERTSLGSLLDHTGAFGESEKYAARVFGAD
Template Known Secondary structure  TTTTTGGGGS
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   162.......170.........180.........190.........200.........210.........220.
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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