Job Description P38684 Confidence 96.63% Date Thu Jan 5 11:58:14 GMT 2012 Rank 137 Aligned Residues 50 % Identity 18% Template c1h0mD_ PDB info PDB header:transcription/dna Chain: D: PDB Molecule:transcriptional activator protein trar; PDBTitle: three-dimensional structure of the quorum sensing protein2 trar bound to its autoinducer and to its target dna Resolution 3.0 Å

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		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	G	E	P	I	K	L	T	R	A	E	Y	E	M	L	V	A	F	V	T	N	P	G	E	I	L	S	R	E	R	L	L	R	M	L	S	A	R	R	V	E	N	P	D	L	R	T	V	D	V	L	I	R	R	L	R	H	K	L	S
Query Conservation
Alig confidence																							.	.	.	.											.	.	.	.	.	.
Template Conservation																							.	.	.	.											.	.	.	.	.	.
Template Sequence		A	E	D	A	A	W	L	D	P	K	E	A	T	Y	L	R	W	I	A	V	G	.	.	.	.	K	T	X	E	E	I	A	D	V	E	.	.	.	.	.	.	G	V	K	Y	N	S	V	R	V	K	L	R	E	A	X	K	R	F	D
Template Known Secondary structure			B																	T	T	T	.	.	.	.										T	.	.	.	.	.	.	T																		T
Template Predicted Secondary structure																							.	.	.	.											.	.	.	.	.	.
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.					.	190	.	.	.	.	.	.	.	.							.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions