Job Description P30979 Confidence 92.44% Date Thu Jan 5 11:46:51 GMT 2012 Rank 167 Aligned Residues 87 % Identity 16% Template d1ku9a_ SCOP info DNA/RNA-binding 3-helical bundle "Winged helix" DNA-binding domain DNA-binding protein Mj223 Resolution 2.80

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		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.				.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.					.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.							.	.
Predicted Secondary structure																			.	.	.																																	.	.	.	.																	.	.	.	.	.	.
Query SS confidence																			.	.	.																																	.	.	.	.																	.	.	.	.	.	.
Query Sequence		N	I	D	L	N	L	L	T	I	F	E	A	V	Y	V	H	K	.	.	.	G	I	V	N	A	A	K	V	L	N	L	T	P	S	A	I	S	Q	S	I	Q	K	L	R	V	I	F	P	D	P	L	F	.	.	.	.	I	R	K	G	Q	G	V	T	P	T	A	F	A	M	H	L	.	.	.	.	.	.	H	E
Query Conservation																			.	.	.																																	.	.	.	.																	.	.	.	.	.	.
Alig confidence																			.	.	.																																	.	.	.	.																	.	.	.	.	.	.
Template Conservation
Template Sequence		G	L	N	K	S	V	G	A	V	Y	A	I	L	Y	L	S	D	K	P	L	T	I	S	D	I	X	E	E	L	K	I	S	K	G	N	V	S	X	S	L	K	K	L	E	E	L	G	F	V	R	K	V	W	I	K	G	E	R	K	N	Y	Y	E	A	V	D	G	F	S	S	I	K	D	I	A	K	R	K	H	D
Template Known Secondary structure		T																S	S												T																T	T	S							T	T		S	S
Template Predicted Secondary structure
Template SS confidence
		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	I	S	Q	G	L	E	S	I	L	G	A	L	D	I	E	G	S	Y	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	I	A	K	T	Y	E	D	L	K	K	L	E	E	K	C	N	E	E	E
Template Known Secondary structure																	S		T	T	S
Template Predicted Secondary structure
Template SS confidence
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions