Job Description P30979 Confidence 99.60% Date Thu Jan 5 11:46:51 GMT 2012 Rank 24 Aligned Residues 199 % Identity 15% Template c2ql3G_ PDB info PDB header:transcription Chain: G: PDB Molecule:probable transcriptional regulator, lysr family protein; PDBTitle: crystal structure of the c-terminal domain of a probable lysr family2 transcriptional regulator from rhodococcus sp. rha1 Resolution 2.05 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.			.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
Predicted Secondary structure																																						.	.
Query SS confidence																																						.	.
Query Sequence		Q	R	T	I	T	I	A	T	T	P	S	V	G	A	L	V	L	P	V	I	Y	R	A	I	K	T	H	Y	P	Q	L	L	L	R	N	P	.	.	P	I	S	D	A	E	N	Q	L	S	Q	F	Q	T	D	L	I	I	D	N	M	F	C	T	N	R	T	V	Q	H	H	V	L	F	T	D	N	M	V	L	I	C
Query Conservation																																						.	.
Alig confidence																																						.	.
Template Conservation
Template Sequence		A	G	P	I	A	V	G	C	Y	P	A	L	G	P	T	I	L	P	S	X	L	Y	A	F	T	A	E	Y	P	R	A	S	V	E	F	R	E	D	T	Q	N	R	L	R	T	Q	L	E	G	G	E	L	D	V	A	I	V	Y	D	L	D	L	S	P	E	W	Q	T	V	P	L	X	T	R	E	P	X	V	V	L
Template Known Secondary structure											G	G	G	T	T	T	T													T	T																				T	S		S						S	S	S			S	S
Template Predicted Secondary structure
Template SS confidence
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
		194	.	.	.	.	.	200	.	.	.			.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
Predicted Secondary structure												.	.
Query SS confidence												.	.
Query Sequence		R	E	G	N	P	L	L	S	L	E	.	.	D	D	R	E	T	I	D	N	A	A	H	V	L	L	L	P	E	E	Q	N	F	S	G	L	R	Q	R	V	Q	E	M	F	P	D	R	Q	I	N	F	T	S	Y	N	I	L	T	I	A	A	L	V	A	N	S	D	M	L	A	I	I	P	S	R	F	Y	N	L	F
Query Conservation												.	.
Alig confidence												.	.																			.
Template Conservation																																.
Template Sequence		G	A	E	H	P	L	A	G	V	D	G	P	V	R	L	A	D	L	A	E	H	P	X	V	L	L	D	A	P	P	.	S	T	N	H	A	X	D	V	C	R	E	A	G	F	A	P	R	V	A	Y	R	T	A	N	F	E	T	A	R	A	F	V	G	R	G	L	G	W	T	L	L	L	Q	R	P	R	V	D	V
Template Known Secondary structure			T	T	S	T	T	T	T	S		S		B		G	G	G	G	T	T	S								T	T	.												T	T										S												T	S		B				S				S	S		B
Template Predicted Secondary structure																																.
Template SS confidence
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
		272	.	.	.	.		.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
Predicted Secondary structure							.
Query SS confidence							.
Query Sequence		S	R	C	W	P	.	L	E	K	L	P	F	P	S	L	N	E	E	Q	I	D	F	S	I	H	Y	N	K	F	S	L	R	D	P	I	L	H	G	V	I	D	V	I	R	N
Query Conservation							.
Alig confidence							.
Template Conservation
Template Sequence		T	Y	E	G	L	P	V	V	V	K	P	I	A	E	P	K	P	A	S	V	A	V	V	V	A	W	H	Q	E	A	T	L	S	R	V	A	R	A	F	I	R	F	V	T	A
Template Known Secondary structure			T	T	S		B						B		S	S													T	T															T
Template Predicted Secondary structure
Template SS confidence
		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions