Job Description P30979 Confidence 99.70% Date Thu Jan 5 11:46:51 GMT 2012 Rank 17 Aligned Residues 195 % Identity 14% Template c2hxrA_ PDB info PDB header:transcription Chain: A: PDB Molecule:hth-type transcriptional regulator cynr; PDBTitle: structure of the ligand binding domain of e. coli cynr, a2 transcriptional regulator controlling cyanate metabolism Resolution 2.05 Å

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		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.			160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
Predicted Secondary structure																																												.	.
Query SS confidence																																												.	.
Query Sequence		T	I	T	I	A	T	T	P	S	V	G	A	L	V	L	P	V	I	Y	R	A	I	K	T	H	Y	P	Q	L	L	L	R	N	P	P	I	S	D	A	E	N	Q	.	.	L	S	Q	F	Q	T	D	L	I	I	D	N	M	F	C	T	N	R	T	V	Q	H	H	V	L	F	T	D	N	M	V	L	I	C	R	E
Query Conservation																																												.	.
Alig confidence																																												.	.
Template Conservation
Template Sequence		S	L	R	I	A	V	T	P	T	F	T	S	Y	F	I	G	P	L	X	A	D	F	Y	A	R	Y	P	S	I	T	L	Q	L	Q	E	X	S	Q	E	K	I	E	D	X	L	C	R	D	E	L	D	V	G	I	A	F	A	P	V	H	S	P	E	L	E	A	I	P	L	L	T	E	S	L	A	L	V	V	A	Q
Template Known Secondary structure													T	T	T													T	T	S																		T	T	S		S						S	S				T	T																	T
Template Predicted Secondary structure
Template SS confidence
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
		196	.	.	.	200	.	.	.	.		.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
Predicted Secondary structure											.
Query SS confidence											.
Query Sequence		G	N	P	L	L	S	L	E	D	.	D	R	E	T	I	D	N	A	A	H	V	L	L	L	P	E	E	Q	N	F	S	G	L	R	Q	R	V	Q	E	M	F	P	D	R	Q	I	N	F	T	S	Y	N	I	L	T	I	A	A	L	V	A	N	S	D	M	L	A	I	I	P	S	R	F	Y	N	L	F	S	R	C
Query Conservation											.
Alig confidence											.																																																																				.	.	.
Template Conservation																																																																															.	.	.
Template Sequence		H	H	P	L	A	V	H	E	Q	V	A	L	S	R	L	H	D	E	K	L	V	L	L	S	A	E	F	A	T	R	E	Q	I	D	H	Y	C	E	K	A	G	L	H	P	Q	V	V	I	E	A	N	S	I	S	A	V	L	E	L	I	R	R	T	S	L	S	T	L	L	P	A	A	I	A	T	Q	H	.	.	.
Template Known Secondary structure		T	S	G	G	G	G		S				G	G	G	G	G	G								T	T	S													T	T										S												S	S		B					T							.	.	.
Template Predicted Secondary structure																																																																															.	.	.
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
		275	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	P	L	E	K	L	P	F	P	S	L	N	E	E	Q	I	D	F	S	I	H	Y	N	K	F	S	L	R	D	P	I	L	H	G	V	I	D	V	I	R	N	A
Query Conservation
Alig confidence															.
Template Conservation															.
Template Sequence		D	G	L	K	A	I	S	L	A	P	P	L	L	.	E	R	T	A	V	L	L	R	R	K	N	S	W	Q	T	A	A	A	K	A	F	L	H	X	A	L	D	K
Template Known Secondary structure		T	T							S	S		S		.										T	T	S
Template Predicted Secondary structure															.
Template SS confidence
		249	250	.	.	.	.	.	.	.	.	.	260	.		.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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