Job Description P30979 Confidence 99.34% Date Thu Jan 5 11:46:51 GMT 2012 Rank 35 Aligned Residues 198 % Identity 12% Template c2f78A_ PDB info PDB header:gene regulation Chain: A: PDB Molecule:hth-type transcriptional regulator benm; PDBTitle: benm effector binding domain with its effector benzoate Resolution 2.05 Å

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		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.			.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
Predicted Secondary structure																																									.	.
Query SS confidence																																									.	.
Query Sequence		Q	R	T	I	T	I	A	T	T	P	S	V	G	A	L	V	L	P	V	I	Y	R	A	I	K	T	H	Y	P	Q	L	L	L	R	N	P	P	I	S	.	.	D	A	E	N	Q	L	S	Q	F	Q	T	D	L	I	I	D	N	M	F	C	T	N	R	T	V	Q	H	H	V	L	F	T	D	N	M	V	L	I	C
Query Conservation																																									.	.
Alig confidence																																									.	.
Template Conservation
Template Sequence		E	K	T	I	R	I	G	F	V	G	S	L	L	F	G	L	L	P	R	I	I	H	L	Y	R	Q	A	H	P	N	L	R	I	E	L	Y	E	M	G	T	K	A	Q	T	E	A	L	K	E	G	R	I	D	A	G	F	G	R	L	K	I	S	D	P	A	I	K	R	T	L	L	R	N	E	R	L	M	V	A	V
Template Known Secondary structure		S									G	G	G	G	G	T	T													T	T																				T	S		S					S						T	T
Template Predicted Secondary structure
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
		194	.	.	.	.	.	200				.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.			.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
Predicted Secondary structure									.	.	.																						.	.
Query SS confidence									.	.	.																						.	.
Query Sequence		R	E	G	N	P	L	L	.	.	.	S	L	E	D	D	R	E	T	I	D	N	A	A	H	V	L	L	L	P	E	E	.	.	Q	N	F	S	G	L	R	Q	R	V	Q	E	M	F	P	D	R	Q	I	N	F	T	S	Y	N	I	L	T	I	A	A	L	V	A	N	S	D	M	L	A	I	I	P	S	R	F	Y
Query Conservation									.	.	.																						.	.
Alig confidence									.	.	.																						.	.
Template Conservation
Template Sequence		H	A	S	H	P	L	N	Q	M	K	D	K	G	V	H	L	N	D	L	I	D	E	K	I	L	L	Y	P	S	S	P	K	P	N	F	S	T	H	V	M	N	I	F	S	D	H	G	L	E	P	T	K	I	N	E	V	R	E	V	Q	L	A	L	G	L	V	A	A	G	E	G	I	S	L	V	P	A	S	T	Q
Template Known Secondary structure			T	T	S	G	G	G	G	G	T	T	T		B		G	G	G	S	T	T	S								S	S	S	S	S											T	T	T				S	S					S	S											T	S		B					G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
		269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	L	F	S	R	C	W	P	L	E	K	L	P	F	P	S	L	N	E	E	Q	I	D	F	S	I	H	Y	N	K	F	S	L	R	D	P	I	L	H	G	V	I	D	V	I	R	N	A	F
Query Conservation
Alig confidence			.	.																	.												.
Template Conservation			.	.																	.												.
Template Sequence		S	.	.	I	Q	L	F	N	L	S	Y	V	P	L	L	D	P	D	A	.	I	T	P	I	Y	I	A	V	R	N	M	.	E	E	S	T	Y	I	Y	S	L	Y	E	T	I	R	Q	I	Y
Template Known Secondary structure		G	.	.				T	T						B			T	T		.										S	S	.
Template Predicted Secondary structure			.	.																	.												.
Template SS confidence
		249			250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.		.	.	.	.	270	.	.	.	.	.	.		.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions