 |
Job Description | P76056 | Confidence | 6.14% | Date | Wed Jan 25 15:21:05 GMT 2012 |
Rank | 100 | Aligned Residues | 34 |
% Identity | 21% | Template | d1s7oa_ |
SCOP info | DNA/RNA-binding 3-helical bundle
| Sigma3 and sigma4 domains of RNA polymerase sigma factors
| YlxM/p13-like
|
Resolution | 2.31 |
|
  |   |
359 | 360 | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
H | T | F | A | C | W | L | L | T | A | G | A | N | P | A | F | I | A | S | Q | M | G | H | E | T | A | Q | M | V | Y | E | I | Y | G | M |
Query Conservation |   |
|
|   |
|
|   |
|   |   |   |
|   |   |   |   |   |
|   |   |   |
|
|
|   |
|   |   |   |
|   |   |   |
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |
|
|   |
|   |   |   |   |   |
|
|   |   |
|
|
|   |   |
|
| . |
|
|   |   |
|
|   |   |   |
|   |
|
Template Sequence |   |
M | N | Y | I | E | L | Y | Y | A | D | D | Y | S | L | A | E | I | A | D | E | F | G | . |
V | S | R | Q | A | V | Y | D | N | I | K | R |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  | T |
|
|
|  |  |  |  |  |  |  |  | T | . |
|
|  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |
| . |
|
|  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
28 | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | |
50 | . | . | . | . | . | . | . | . | . | 60 | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|