Job Description P76056 Confidence 99.90% Date Wed Jan 25 15:21:05 GMT 2012 Rank 6 Aligned Residues 175 % Identity 21% Template c3nkhB_ PDB info PDB header:recombination Chain: B: PDB Molecule:integrase; PDBTitle: crystal structure of integrase from mrsa strain staphylococcus aureus Resolution 2.50 Å

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		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.								.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
Predicted Secondary structure																																																		.	.	.	.	.	.	.
Query SS confidence																																																		.	.	.	.	.	.	.
Query Sequence		Q	N	L	W	K	F	A	V	Y	S	G	L	R	H	G	E	L	A	A	L	A	W	E	D	V	D	L	E	K	G	I	V	N	V	R	R	N	L	T	I	L	D	M	F	G	P	P	K	.	.	.	.	.	.	.	T	N	A	G	I	R	T	V	T	L	L	Q	P	A	L	E	A	L	K	E	Q	Y	K	L	T
Query Conservation																																																		.	.	.	.	.	.	.
Alig confidence																																																		.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	L	X	T	E	F	Q	A	L	N	G	X	R	I	G	E	X	L	A	I	Q	N	E	D	I	D	F	D	N	K	S	L	N	I	N	G	T	I	H	W	F	H	D	E	S	G	G	F	G	V	K	D	T	T	K	T	E	S	S	Y	R	T	I	G	L	S	S	R	S	C	E	I	L	K	K	A	I	L	E	N
Template Known Secondary structure																				T		B	G	G	G			T	T	T	T														T	T	S									S	S	S
Template Predicted Secondary structure
Template SS confidence
		34	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
		292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.		350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370
Predicted Secondary structure																																																												.
Query SS confidence																																																												.
Query Sequence		G	H	H	R	K	S	E	I	T	F	Y	H	R	E	Y	G	R	T	E	K	Q	K	L	H	F	V	F	M	P	R	V	C	N	G	K	Q	K	P	Y	Y	S	V	S	S	L	G	A	R	W	N	A	A	V	K	R	A	G	I	.	R	R	R	N	P	Y	H	T	R	H	T	F	A	C	W	L	L	T	A	G	A
Query Conservation																																																												.
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																								.
Template Conservation						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	K	D	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	W	N	D	G	Y	L	N	R	N	F	V	F	T	N	H	K	G	N	P	X	Q	T	E	R	F	N	K	I	L	R	E	A	A	K	D	V	G	I	D	K	E	V	S	S	H	I	L	R	H	S	H	I	S	L	L	S	Q	Q	G	V
Template Known Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				T	T					S	B	S	S	B		T	T	S	S	B																	T	T			S			S															T	T
Template Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		114	.	.	.																.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
		371	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	P	A	F	I	A	S	Q	M	G	H	E	T	A	Q	M	V	Y	E	I	Y	G	M	W	I	D	D	M	N	D	E	Q	I	A	M	L	N	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	L	K	A	I	X	D	R	V	G	H	S	D	H	R	T	T	L	S	I	Y	S	H	V	T	E	Q	X	D	K	D	X	X	N	K	L	E	Q
Template Known Secondary structure												S	T	T																		T						T	T
Template Predicted Secondary structure
Template SS confidence
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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