 |
Job Description | P76056 | Confidence | 6.48% | Date | Wed Jan 25 15:21:05 GMT 2012 |
Rank | 91 | Aligned Residues | 31 |
% Identity | 13% | Template | c3mzyA_ |
PDB info |
PDB header:rna binding protein | Chain: A: PDB Molecule:rna polymerase sigma-h factor; |
PDBTitle: the crystal structure of the rna polymerase sigma-h factor from2 fusobacterium nucleatum to 2.5a
|
Resolution | 2.50 Å |
|
  |   |
362 | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
A | C | W | L | L | T | A | G | A | N | P | A | F | I | A | S | Q | M | G | H | E | T | A | Q | M | V | Y | E | I | Y | G | M |
Query Conservation |   |
|
|   |
|   |   |   |
|   |   |   |   |   |
|   |   |   |
|
|
|   |
|   |   |   |
|   |   |   |
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |
|   |
|   |   |
|
|
|   |   |
|   | . |
|
|   |   |
|
|
|   |   |
|   |
|
Template Sequence |   |
V | L | T | Y | L | I | R | G | Y | S | Y | R | E | I | A | T | I | L | S | . |
K | N | L | K | S | I | D | N | T | I | Q | R |
Template Known Secondary structure |   |
 |  |  |  |  | T | T | T |
|
|  |  |  |  |  |  |  |  | T | . |
|
|  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |
| . |
|
|  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
157 | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | |
. | . | . | . | 180 | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|