Job Description P76056 Confidence 99.29% Date Wed Jan 25 15:21:05 GMT 2012 Rank 21 Aligned Residues 91 % Identity 20% Template c2oxoA_ PDB info PDB header:dna binding protein Chain: A: PDB Molecule:integrase; PDBTitle: crystallization and structure determination of the core-2 binding domain of bacteriophage lambda integrase Resolution 2.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		81	.	.	.	.	.	.	.	.	90	.	.	.		.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure															.
Query SS confidence															.
Query Sequence		K	T	F	G	E	L	C	D	I	W	T	K	I	.	K	E	T	E	L	T	T	N	T	M	K	K	T	K	S	Q	L	K	T	L	R	I	I	I	C	E	S	T	P	I	S	H	I	R	Y	S	D	I	L	N	Y	R	N	E	L	L	H	G	E	T	L	Y	L	D	N	P	R	S	N	K	K	G	R	T	V	R
Query Conservation															.
Alig confidence															.																			.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																		.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		M	T	L	H	S	W	L	D	R	Y	E	K	I	L	A	S	R	G	I	K	Q	K	T	L	I	N	Y	M	S	K	I	K	.	A	I	R	R	G	L	P	D	A	P	L	E	D	I	T	T	K	E	I	A	A	M	L	N	G	Y	I	D	E	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	A	A
Template Known Secondary structure			B																															.						S		S		B	G	G	G																T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																		.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.		.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.															.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	V	D	N	Y	I	A	L	L	C	S	L	L	R	F	A	Y	Q	S	G	F	I	S	T	K	P	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	A	K	L	I	R	S	T	L	S	D	A	F	R	E	A	I	A	E	G	H	I	T	T	N	H	V
Template Known Secondary structure																				T	T	S		S	S		T	T
Template Predicted Secondary structure
Template SS confidence
		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions