 |
Job Description | P0ACH8 | Confidence | 59.36% | Date | Thu Jan 5 11:18:13 GMT 2012 |
Rank | 468 | Aligned Residues | 62 |
% Identity | 15% | Template | d1j1va_ |
SCOP info | DNA/RNA-binding 3-helical bundle
| TrpR-like
| Chromosomal replication initiation factor DnaA C-terminal domain IV
|
Resolution | 2.10 |
|
 |
  |   |
219 | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | |
|
|
|
|
|
|
. | . | 250 | . | . | . | . | |
. | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 |
Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . |  |  |  |  |  |  |
| . |
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
L | N | A | N | Y | A | M | G | I | F | Q | R | V | M | Q | L | T | M | K | Q | Y | I | T | A | M | R | I | N | H | . |
. |
. |
. |
. |
. |
. |
V | R | A | L | L | S | D | . |
T | D | K | S | I | L | D | I | A | L | T | A | G | F | R | S | S | S | R | F | Y | S | T | F | G | K |
Query Conservation |   |
|
|   |   |   |
|   |
|   |
|
|   |   |   |
|   |
|
|   |   |   |
|   |   |   |
|
|   |   | . | . | . | . | . | . | . |
|   |   |
|
|   |   | . |
|   |   |
|
|   |
|
|
|   |   |   |
|
|   |   |   |
|   |
|
|
|   |
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|   |
|   |
|
|   |   |
|
|   |   |
|   |
|   |   |   |   |
|   |
|   |   |
|   |   |   |
|   |   |
|
|   |
|
|
|
|
|   |
|   |   |   |   |   |
|
|   |   |
|
|   |   |
|
|   |
|
|
|
|
|
|   |   |
|   |   |
|
Template Sequence |   |
V | T | I | D | N | I | Q | K | T | V | A | E | Y | Y | K | I | K | V | A | D | L | L | S | K | R | R | S | R | S | V | A | R | P | R | Q | X | A | X | A | L | A | K | E | L | T | N | H | S | L | P | E | I | G | D | A | F | G | G | R | D | H | T | T | V | L | H | A | C | R | K |
Template Known Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |  |  | T | T |
|
|  |  |  |  |  | S |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | S |
|
|
|  |  |  |  |  |  |  | T | T | S |
|
|  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
374 | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . | . | . | . | . | . | . | 420 | . | . | . | . | . | . | . | . | . | 430 | . | . | . | . | . | . | . | . | . | 440 | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|