Job Description P0ACH8 Confidence 53.79% Date Thu Jan 5 11:18:13 GMT 2012 Rank 499 Aligned Residues 156 % Identity 13% Template c3kccA_ PDB info PDB header:transcription Chain: A: PDB Molecule:catabolite gene activator; PDBTitle: crystal structure of d138l mutant of catabolite gene activator protein Resolution 1.66 Å

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		58	.	60	.	.	.	.	.	.	.	.	.	70	.	.					.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.		.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.
Predicted Secondary structure																	.	.	.	.																																								.
Query SS confidence																	.	.	.	.																																								.
Query Sequence		E	Y	L	I	N	N	E	K	V	N	I	N	Q	G	H	.	.	.	.	I	T	L	F	W	A	C	T	P	H	Q	L	T	D	T	G	T	C	Q	S	M	A	I	F	N	L	P	M	H	L	F	L	S	W	P	L	D	K	D	.	L	I	N	H	V	T	H	G	M	V	I	K	S	L	A	T	Q	Q	L	S	P
Query Conservation																	.	.	.	.																																								.
Alig confidence																	.	.	.	.																																								.
Template Conservation
Template Sequence		I	H	K	Y	P	S	K	S	T	L	I	H	Q	G	E	K	A	E	T	L	Y	Y	I	V	K	G	S	V	A	V	L	I	K	D	E	E	G	K	E	M	I	L	S	Y	L	N	Q	G	D	F	I	G	E	L	G	L	F	E	E	G	Q	E	R	S	A	W	V	R	A	K	T	A	C	E	V	A	E	I	S	Y
Template Known Secondary structure							T	T						T	T		B																			T	T											T	T				S		T	T	T	T	S	T	T		B			S					S	S
Template Predicted Secondary structure
Template SS confidence
		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
		133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
Predicted Secondary structure																																																																												.	.	.	.	.	.
Query SS confidence																																																																												.	.	.	.	.	.
Query Sequence		F	E	V	R	R	W	Q	Q	E	L	N	S	P	N	E	Q	I	R	Q	L	A	I	D	E	I	G	L	M	L	K	R	F	S	L	S	G	W	E	P	I	L	V	N	K	T	S	R	T	H	K	N	S	V	S	R	H	A	Q	F	Y	V	S	Q	M	L	G	F	I	A	E	N	Y	D	Q	.	.	.	.	.	.
Query Conservation																																																																												.	.	.	.	.	.
Alig confidence																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.
Template Conservation																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	K	F	R	Q	L	I	Q	V	N	P	D	I	L	M	R	L	S	A	Q	M	A	R	R	L	Q	V	T	S	E	K	V	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	L	A	F	L	L	V	T	G	R	I	A	Q	T	L	L	N	L	A	K	Q	P	D	A	M	T	H	P	D	G
Template Known Secondary structure												T																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				T	S	T	T					T	T
Template Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.																		.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
					207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure		.	.	.
Query SS confidence		.	.	.
Query Sequence		.	.	.	A	L	T	I	N	D	V	A	E	H	V	K	L	N	A	N	Y	A	M	G	I	F	Q	R
Query Conservation		.	.	.
Alig confidence		.	.	.
Template Conservation
Template Sequence		M	Q	I	K	I	T	R	Q	E	I	G	Q	I	V	G	C	S	R	E	T	V	G	R	I	L	K	M
Template Known Secondary structure																T
Template Predicted Secondary structure
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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