Job Description P0ACH8 Confidence 100.00% Date Thu Jan 5 11:18:13 GMT 2012 Rank 1 Aligned Residues 233 % Identity 13% Template c3gbgA_ PDB info PDB header:transcription regulator Chain: A: PDB Molecule:tcp pilus virulence regulatory protein; PDBTitle: crystal structure of toxt from vibrio cholerae o395 Resolution 1.90 Å

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		42	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.			.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																								.	.
Query SS confidence																								.	.
Query Sequence		H	W	H	G	Q	V	E	V	N	V	P	F	D	G	D	V	E	Y	L	I	N	N	.	.	E	K	V	N	I	N	Q	G	H	I	T	L	F	W	A	C	T	P	H	Q	L	T	D	T	G	T	C	Q	S	M	A	I	F	N	L	P	M	H	L	F	L	S	W	P	L	D	K	D	L	I	N	H	V	T	H	G
Query Conservation																								.	.
Alig confidence																								.	.																																				.	.	.	.	.	.	.
Template Conservation																																																													.	.	.	.	.	.	.
Template Sequence		L	Y	I	N	D	Y	K	M	F	W	I	D	S	G	I	A	K	L	I	D	K	N	C	L	V	S	Y	E	I	N	S	S	S	I	I	L	L	K	K	N	S	I	Q	R	F	S	L	T	S	L	S	D	E	N	I	N	V	S	V	.	.	.	.	.	.	.	I	T	I	S	D	S	F	I	R	S	L	K	S	Y
Template Known Secondary structure					S	S							S	S	S							T	T	T	T							T	T							T	T												S	S							.	.	.	.	.	.	.
Template Predicted Secondary structure																																																													.	.	.	.	.	.	.
Template SS confidence
		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.								.	.	.	.	.	.	90	.	.	.	.	.	.	.
		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	V	I	K	S	L	A	T	Q	Q	L	S	P	F	E	V	R	R	W	Q	Q	E	L	N	S	P	N	E	Q	I	R	Q	L	A	I	D	E	I	G	L	M	L	K	R	F	S	L	S	G	W	E	P	I	L	V	N	K	T	S	R	T	H	K	N	S	V	S	R	H	A	Q	F	Y	V	S	Q	M	L	G	F
Query Conservation
Alig confidence																																																.	.	.	.	.	.	.	.	.	.
Template Conservation																																																.	.	.	.	.	.	.	.	.	.
Template Sequence		I	L	G	N	K	D	L	L	L	W	N	C	E	H	N	D	I	A	V	L	S	E	V	V	N	G	F	R	E	I	N	Y	S	D	E	F	L	K	V	F	F	S	G	F	F	S	.	.	.	.	.	.	.	.	.	.	K	V	E	K	K	Y	N	S	I	F	I	T	D	D	L	D	A	M	E	K	I	S	C	L
Template Known Secondary structure															S	S										T	T	T	S	S																		.	.	.	.	.	.	.	.	.	.			T	T	T	S	S	S		S	S			T	T
Template Predicted Secondary structure																																																.	.	.	.	.	.	.	.	.	.
Template SS confidence
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.											.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	A	E	N	Y	D	Q	A	L	T	I	N	D	V	A	E	H	V	K	L	N	A	N	Y	A	M	G	I	F	Q	R	V	M	Q	L	T	M	K	Q	Y	I	T	A	M	R	I	N	H	V	R	A	L	L	S	D	T	D	K	S	I	L	D	I	A	L	T	A	G	F	R	S	S	S	R	F	Y	S	T	F	G
Query Conservation
Alig confidence																																	.
Template Conservation																																	.
Template Sequence		V	K	S	D	I	T	R	N	W	R	W	A	D	I	C	G	E	L	R	T	N	R	M	I	L	K	K	E	L	E	S	.	R	G	V	K	F	R	E	L	I	N	S	I	R	I	S	Y	S	I	S	L	M	K	T	G	E	F	K	I	K	Q	I	A	Y	Q	S	G	F	A	S	V	S	Y	F	S	T	V	F	K
Template Known Secondary structure					T	T	T	S												T												T	.	T	T																						T											T	T		S
Template Predicted Secondary structure																																	.
Template SS confidence
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.		.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
		280	.	.	.	.	.	.	.	.	.	290	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	Y	V	G	M	S	P	Q	Q	Y	R	K	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	T	M	N	V	A	P	S	E	Y	L	F	M
Template Known Secondary structure					S	S
Template Predicted Secondary structure
Template SS confidence
		257	.	.	260	.	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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