Job Description P0ACH8 Confidence 54.03% Date Thu Jan 5 11:18:13 GMT 2012 Rank 496 Aligned Residues 155 % Identity 12% Template c1zreB_ PDB info PDB header:gene regulation/dna Chain: B: PDB Molecule:catabolite gene activator; PDBTitle: 4 crystal structures of cap-dna with all base-pair2 substitutions at position 6, cap-[6g;17c]icap38 dna Resolution 2.80 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		59	60	.	.	.	.	.	.	.	.	.	70	.	.					.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.		.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.
Predicted Secondary structure																.	.	.	.																																					.
Query SS confidence																.	.	.	.																																					.
Query Sequence		Y	L	I	N	N	E	K	V	N	I	N	Q	G	H	.	.	.	.	I	T	L	F	W	A	C	T	P	H	Q	L	T	D	T	G	T	C	Q	S	M	A	I	F	N	L	P	M	H	L	F	L	S	W	P	L	.	D	K	D	L	I	N	H	V	T	H	G	M	V	I	K	S	L	A	T	Q	Q	L	S	P	F
Query Conservation																.	.	.	.																																					.
Alig confidence																.	.	.	.																																					.
Template Conservation
Template Sequence		H	K	Y	P	S	K	S	T	L	I	H	Q	G	E	K	A	E	T	L	Y	Y	I	V	K	G	S	V	A	V	L	I	K	D	E	E	G	K	E	M	I	L	S	Y	L	N	Q	G	D	F	I	G	E	L	G	L	F	E	E	G	Q	E	R	S	A	W	V	R	A	K	T	A	C	E	V	A	E	I	S	Y	K
Template Known Secondary structure						T	T						T	T	S	B										S									T	T											T	T				S		T	T	S	S	S	T	T		B			S					S	S
Template Predicted Secondary structure
Template SS confidence
		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
Predicted Secondary structure																																																																									.	.	.	.	.	.	.	.	.
Query SS confidence																																																																									.	.	.	.	.	.	.	.	.
Query Sequence		E	V	R	R	W	Q	Q	E	L	N	S	P	N	E	Q	I	R	Q	L	A	I	D	E	I	G	L	M	L	K	R	F	S	L	S	G	W	E	P	I	L	V	N	K	T	S	R	T	H	K	N	S	V	S	R	H	A	Q	F	Y	V	S	Q	M	L	G	F	I	A	E	N	Y	.	.	.	.	.	.	.	.	.
Query Conservation																																																																									.	.	.	.	.	.	.	.	.
Alig confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.
Template Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	F	R	Q	L	I	Q	V	N	P	D	I	L	M	R	L	S	A	Q	M	A	R	R	L	Q	V	T	S	E	K	V	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	L	A	F	L	D	V	T	G	R	I	A	Q	T	L	L	N	L	A	K	Q	P	D	A	M	T	H	P	D	G	M
Template Known Secondary structure											T																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			T	T	S	T	T					T	T
Template Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.																		.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure
Query SS confidence
Query Sequence		D	Q	A	L	T	I	N	D	V	A	E	H	V	K	L	N	A	N	Y	A	M	G	I	F	Q	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	I	K	I	T	R	Q	E	I	G	Q	I	V	G	C	S	R	E	T	V	G	R	I	L	K	M
Template Known Secondary structure															T	S
Template Predicted Secondary structure
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions