Job Description P0ACP7 Confidence 83.79% Date Thu Jan 5 11:18:40 GMT 2012 Rank 450 Aligned Residues 201 % Identity 9% Template d2liva_ SCOP info Periplasmic binding protein-like I Periplasmic binding protein-like I L-arabinose binding protein-like Resolution 2.40

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		61	.	.	.	.	.	.	.	.	70	.	.	.	.			.	.	.	.	.	80	.	.	.	.	.	.	.										.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																.	.														.	.	.	.	.	.	.	.	.
Query SS confidence																.	.														.	.	.	.	.	.	.	.	.
Query Sequence		S	I	G	L	L	A	T	S	S	E	A	A	Y	F	.	.	A	E	I	I	E	A	V	E	K	N	C	F	Q	.	.	.	.	.	.	.	.	.	K	G	Y	T	L	I	L	G	N	A	W	N	N	L	E	K	Q	R	A	Y	L	S	M	M	A	Q	K	R	V	D	G	L	L	V	M	C	S	E	Y	P	E	P
Query Conservation																.	.														.	.	.	.	.	.	.	.	.
Alig confidence																.	.														.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	V	A	V	V	G	A	M	S	G	P	V	A	Q	Y	G	D	Q	E	F	T	G	A	E	Q	A	V	A	D	I	N	A	K	G	G	I	K	G	N	K	L	Q	I	A	K	Y	D	D	A	C	D	P	K	Q	A	V	A	V	A	N	K	V	V	N	D	G	I	K	Y	V	I	G	H	L	C	S	S	S	T	Q
Template Known Secondary structure									S	S	S	S	S																					T	T	T	B	T	T	B										T	T															T	T									S
Template Predicted Secondary structure
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.							.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
Predicted Secondary structure																								.	.	.	.	.	.
Query SS confidence																								.	.	.	.	.	.
Query Sequence		L	L	A	M	L	E	E	Y	R	H	I	P	M	V	V	M	D	W	G	E	A	K	.	.	.	.	.	.	A	D	F	T	D	A	V	I	D	N	A	F	E	G	G	Y	M	A	G	R	Y	L	I	E	R	G	H	R	E	I	G	V	I	P	G	P	L	E	R	N	T	G	A	G	R	L	A	G	F	M	K	A
Query Conservation																								.	.	.	.	.	.
Alig confidence																								.	.	.	.	.	.																																				.	.
Template Conservation																																																																	.	.
Template Sequence		P	A	S	D	I	Y	E	D	E	G	I	L	M	I	T	P	A	A	T	A	P	E	L	T	A	R	G	Y	Q	L	I	L	R	T	T	G	L	D	S	D	Q	G	P	T	A	A	K	Y	I	L	E	K	V	K	P	Q	R	I	A	I	V	H	D	.	.	K	Q	Q	Y	G	E	G	L	A	R	A	V	Q	D	G
Template Known Secondary structure										T	T						S	S				G	G	G	S	S	S			S	S					S			G	G	G												T	T			S	S							.	.	S	S
Template Predicted Secondary structure																																																																	.	.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.			.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	E	E	A	M	I	K	V	P	E	S	W	I	V	Q	G	D	F	E	P	E	S	G	Y	R	A	M	Q	Q	I	L	S	Q	P	H	R	P	T	A	V	F	C	G	G	D	I	M	A	M	G	A	L	C	A	A	D	E	M	G	L	R	V	P
Query Conservation
Alig confidence																					.	.	.
Template Conservation																					.	.	.
Template Sequence		L	K	K	G	N	A	N	V	V	F	F	D	G	I	T	A	G	E	K	.	.	.	D	F	S	T	L	V	A	R	L	K	K	E	N	I	D	F	V	Y	Y	G	G	Y	H	P	E	M	G	Q	I	L	R	Q	A	R	A	A	G	L	K	T	Q
Template Known Secondary structure				T	T	T											T	T			.	.	.												T	T		S						S															T	T
Template Predicted Secondary structure																					.	.	.
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180				.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions