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Job DescriptionP0ACP7
Confidence99.89%DateThu Jan 5 11:18:40 GMT 2012
Rank59Aligned Residues269
% Identity16%Templated2fvya1
SCOP infoPeriplasmic binding protein-like I Periplasmic binding protein-like I L-arabinose binding protein-like
Resolution0.92

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   61........70.........80........ .90.........100.........110.........120.........130.........
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Query Sequence  SIGLLATSSEAAYFAEIIEAVEKNCFQK. GYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEEYRH
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Template Sequence  RIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQ
Template Known Secondary structure  S
TTST
TT
TT
TT
S

SSGGGTT
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   4.....10.........20.........30.........40.........50.........60.........70.........80...
 
   140.........150.. .......160.........170......... 180.........190.........200.
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Query Sequence  IPMVVMDWGEAKA. . . . . . . DFTDAVIDNAFEGGYMAGRYLIERGHR. . . . . . . . . . . EIGVIPGPLERNTGAGRLAGFM
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Template Sequence  NVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVI
Template Known Secondary structure  T

SS


T
TT


GGG
TT
SSS
STT
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   84.....90.........100.........110.........120.........130.........140.........150.........160...
 
   202.......210.........220.........230........ .240.........250.........260.........270.........
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Query Sequence  KAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPH. . RPTAVFCGGDIMAMGALCAADEMGLRVPQDVSLIGYDNVRN
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Template Sequence  KELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHN. . . KSSIPVFGVDALPE
Template Known Secondary structure  TT


TT
TSTTGGG

SSTT...
TTS

SB

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   164.....170.........180.........190.........200.........210.........220...... ...230.........240
 
   280... ......290.........300.........310...... ...320.........330..
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Query Sequence  ARYF. . . TPALTTIHQPKDSLGETAFNMLLDRIVNKREEP. . . . . . . . QSIEVHPRLIERRSVA
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Template Sequence  ALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLA
Template Known Secondary structure  TSS
B

TTS
TTTTS



BTT



TTTGG
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   241........250.........260.........270.........280.........290.........300....
 
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No model constructed - rank, confidence too low




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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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