Job Description P0ACP7 Confidence 99.97% Date Thu Jan 5 11:18:40 GMT 2012 Rank 29 Aligned Residues 303 % Identity 13% Template d1jx6a_ SCOP info Periplasmic binding protein-like I Periplasmic binding protein-like I L-arabinose binding protein-like Resolution 1.50

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		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.			.	.	.	.	.	.	.	.	70	.	.		.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
Predicted Secondary structure																																															.	.												.
Query SS confidence																																															.	.												.
Query Sequence		T	V	S	H	V	I	N	K	T	R	F	V	A	E	E	T	R	N	A	V	W	A	A	I	K	E	L	H	Y	S	P	S	A	V	A	R	S	L	K	V	N	H	T	K	S	.	.	I	G	L	L	A	T	S	S	E	A	A	.	Y	F	A	E	I	I	E	A	V	E	K	N	C	F	Q	K	G	Y	T	L	I
Query Conservation																																															.	.												.
Alig confidence												.	.	.	.	.	.						.	.																							.	.												.
Template Conservation												.	.	.	.	.	.						.	.
Template Sequence		G	Y	Q	E	F	L	D	E	F	P	.	.	.	.	.	.	E	Q	R	N	L	.	.	T	N	A	L	S	E	A	V	R	A	Q	P	V	P	L	S	K	P	T	Q	R	P	I	K	I	S	V	V	Y	P	G	Q	Q	V	S	D	Y	W	V	R	N	I	A	S	F	E	K	R	L	Y	K	L	N	I	N	Y	Q
Template Known Secondary structure												.	.	.	.	.	.						.	.										S						S	S			S	S												S	S																		T	T
Template Predicted Secondary structure												.	.	.	.	.	.						.	.
Template SS confidence
		30	.	.	.	.	.	.	.	.	.							40	.	.	.	.			.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
		94	.	.					.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150								.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure					.	.	.	.																																																							.	.	.	.	.	.	.
Query SS confidence					.	.	.	.																																																							.	.	.	.	.	.	.
Query Sequence		L	G	N	.	.	.	.	A	W	N	N	L	E	K	Q	R	A	Y	L	S	M	M	A	Q	K	R	V	D	G	L	L	V	M	C	S	E	Y	P	E	P	L	L	A	M	L	E	E	Y	R	H	I	P	M	V	V	M	D	W	G	E	A	.	.	.	.	.	.	.	K	A	D	F	T	D	A	V	I	D	N	A
Query Conservation					.	.	.	.																																																							.	.	.	.	.	.	.
Alig confidence					.	.	.	.																																																							.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	N	Q	V	F	T	R	P	N	A	D	I	K	Q	Q	S	L	S	L	M	E	A	L	K	S	K	S	D	Y	L	I	F	T	L	D	T	T	R	H	R	K	F	V	E	H	V	L	D	S	T	N	T	K	L	I	L	Q	N	I	T	T	P	V	R	E	W	D	K	H	Q	P	F	L	Y	V	G	F	D	H	A
Template Known Secondary structure									T	T																T	T		S							S	S	S	T	T												S							T			S		B	G	G	G	T	T	S			S
Template Predicted Secondary structure
Template SS confidence
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	E	G	G	Y	M	A	G	R	Y	L	I	E	R	G	H	R	E	I	G	V	I	P	G	P	L	E	R	N	T	G	A	G	R	L	A	G	F	M	K	A	M	E	E	A	M	I	K	V	P	E	S	W	I	V	Q	G	D	F	E	P	E	S	G	Y	R	A	M	Q	Q	I	L	S	Q	P	H	R	P	T	A
Query Conservation
Alig confidence																																																.
Template Conservation																																																.
Template Sequence		E	G	S	R	E	L	A	T	E	F	G	K	F	F	P	K	H	T	Y	Y	S	V	L	Y	F	S	E	G	Y	I	S	D	V	R	G	D	T	F	I	H	Q	V	N	R	D	N	.	N	F	E	L	Q	S	A	Y	Y	T	K	A	T	K	Q	S	G	Y	D	A	A	K	A	S	L	A	K	H	P	D	V	D	F
Template Known Secondary structure															S		T	T									S	T	T																			.												S	S																			S
Template Predicted Secondary structure																																																.
Template SS confidence
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.		.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.			.	280	.	.	.	.	.	.	.	.		.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																						.	.											.
Query SS confidence																																						.	.											.
Query Sequence		V	F	C	G	G	D	I	M	A	M	G	A	L	C	A	A	D	E	M	G	L	R	V	P	Q	D	V	S	L	I	G	Y	D	N	V	R	.	.	N	A	R	Y	F	T	P	A	L	T	.	T	I	H	Q	P	K	D	S	L	G	E	T	A	F	N	M	L	L	D	R	I	V	N	K	R	E	E	P	Q	S	I
Query Conservation																																						.	.											.
Alig confidence																							.	.	.													.	.											.																											.
Template Conservation																							.	.	.																																																				.
Template Sequence		I	Y	A	C	S	T	D	V	A	L	G	A	V	D	A	L	A	E	L	G	R	.	.	.	E	D	I	M	I	N	G	W	G	G	G	S	A	E	L	D	A	I	Q	K	G	D	L	D	I	T	V	M	R	M	N	D	D	T	G	I	A	M	A	E	A	I	K	W	D	L	E	D	K	P	V	.	P	T	V	Y
Template Known Secondary structure					S	S															T		.	.	.	T	T	S			B		S	B												T	S	S								T																T	T				.		S
Template Predicted Secondary structure																							.	.	.																																																				.
Template SS confidence
		261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.				.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.		.	.	.	.
		320	.	.	.	.	.	.	.	.	.	330	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	V	H	P	R	L	I	E	R	R	S	V	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	G	D	F	E	I	V	T	K	A	D	S	P
Template Known Secondary structure										T	T	S
Template Predicted Secondary structure
Template SS confidence
		337	.	.	340	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions