Job Description P0ACP7 Confidence 99.96% Date Thu Jan 5 11:18:40 GMT 2012 Rank 40 Aligned Residues 260 % Identity 22% Template c3clkB_ PDB info PDB header:transcription regulator Chain: B: PDB Molecule:transcription regulator; PDBTitle: crystal structure of a transcription regulator from lactobacillus2 plantarum Resolution 2.08 Å

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		65	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	T	S	S	E	A	A	Y	F	A	E	I	I	E	A	V	E	K	N	C	F	Q	K	G	Y	T	L	I	L	G	N	A	W	N	N	L	E	K	Q	R	A	Y	L	S	M	M	A	Q	K	R	V	D	G	L	L	V	M	C	S	E	Y	P	E	P	L	L	A	M	L	E	E	Y	R	H	I	P	M	V	V
Query Conservation
Alig confidence																																			.	.	.	.	.																																		.	.
Template Conservation																																			.	.	.	.	.																																		.	.
Template Sequence		V	I	A	A	V	V	S	N	F	A	Q	Q	I	L	D	G	I	Q	E	E	A	H	K	N	G	Y	N	L	I	I	V	Y	E	.	.	.	.	.	E	Q	K	H	A	L	L	T	A	I	E	R	P	V	X	G	I	L	L	L	S	I	A	L	T	D	D	N	L	Q	L	L	Q	.	.	S	S	D	V	P	Y	C
Template Known Secondary structure																							T	T	T	T									.	.	.	.	.												S			S						S													.	.		T	T
Template Predicted Secondary structure																																			.	.	.	.	.																																		.	.
Template SS confidence
		63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.						.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.			.	130	.	.	.	.	.
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	D	W	G	E	A	K	A	D	F	T	D	A	V	I	D	N	A	F	E	G	G	Y	M	A	G	R	Y	L	I	E	R	G	H	R	E	I	G	V	I	P	G	P	L	E	R	N	T	G	A	G	R	L	A	G	F	M	K	A	M	E	E	A	M	I	K	V	P	E	S	W	I	V	Q	G	D	F	E	P	E
Query Conservation
Alig confidence																																									.
Template Conservation																																									.
Template Sequence		F	L	S	X	G	F	D	D	D	R	P	F	I	S	S	D	D	E	D	I	G	Y	Q	A	T	N	L	L	I	N	E	G	H	R	Q	I	G	I	A	.	G	I	D	Q	Y	P	Y	T	G	R	K	R	L	A	G	Y	K	K	A	L	K	E	A	N	I	A	I	N	Q	E	W	I	K	P	G	D	Y	S	Y	T
Template Known Secondary structure				S				S	S	S																					T	T	T			S					.	S				S	S																	T	T					G	G	G						S	S
Template Predicted Secondary structure																																									.
Template SS confidence
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.		.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	G	Y	R	A	M	Q	Q	I	L	S	Q	P	H	R	P	T	A	V	F	C	G	G	D	I	M	A	M	G	A	L	C	A	A	D	E	M	G	L	R	V	P	Q	D	V	S	L	I	G	Y	D	N	V	R	N	A	R	Y	F	T	P	A	L	T	T	I	H	Q	P	K	D	S	L	G	E	T	A	F	N	M
Query Conservation
Alig confidence													.
Template Conservation													.
Template Sequence		S	G	E	Q	A	X	K	A	F	G	K	.	N	T	D	L	T	G	I	I	A	A	S	D	X	T	A	I	G	I	L	N	Q	A	S	S	F	G	I	E	V	P	K	D	L	S	I	V	S	I	D	G	T	E	X	C	K	I	T	R	P	Q	L	T	S	I	S	Q	D	F	F	Q	X	G	V	T	G	V	Q	Q
Template Known Secondary structure												T	.	T				S					S	S														T	T			T	T	T	T										G	G	G	G	S	S	S	S
Template Predicted Secondary structure													.
Template SS confidence
		225	.	.	.	.	230	.	.	.	.	.		.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
		305	.	.	.	.	310	.	.		.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
Predicted Secondary structure										.
Query SS confidence										.
Query Sequence		L	L	D	R	I	V	N	K	.	R	E	E	P	Q	S	I	E	V	H	P	R	L	I	E	R	R	S	V	A	D
Query Conservation										.
Alig confidence										.
Template Conservation
Template Sequence		I	H	Q	S	V	K	N	G	S	N	R	I	V	S	Q	Q	F	I	P	V	N	P	V	I	R	K	S	T	A	R
Template Known Secondary structure								T	S																		S	S
Template Predicted Secondary structure
Template SS confidence
		304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions