Return to main results Retrieve Phyre Job Id

Job DescriptionP0ACP7
Confidence99.97%DateThu Jan 5 11:18:40 GMT 2012
Rank33Aligned Residues269
% Identity20%Templatec2qu7B_
PDB info PDB header:transcriptionChain: B: PDB Molecule:putative transcriptional regulator; PDBTitle: crystal structure of a putative transcription regulator2 from staphylococcus saprophyticus subsp. saprophyticus
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   58.60.........70.........80.........90.........100.........110.........120.........130.......
Predicted Secondary structure 



























Query SS confidence 















































































Query Sequence  HTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEEY
Query Conservation      

 
                                                                        
Alig confidence 










.






























































...

Template Conservation 

  



   .   
   
  

   
   
  
               
       




            ...  
Template Sequence  RSNIIAFIVPD. QNPFFTEVLTEISHECQKHHLHVAVASSEENEDKQQDLIETFVSQNVSAIILVPVKSKFQMKR. . . EW
Template Known Secondary structure 
SS.

GGGT

TT
TT

SSSS



G...GG
Template Predicted Secondary structure 




.
















...

Template SS confidence 















































































   63......70... ......80.........90.........100.........110.........120.........130...... ..
 
   138.140.........150.........160.........170.........180.........190.........200.........210.......
Predicted Secondary structure 































Query SS confidence 















































































Query Sequence  RHIPMVVMDWGEAKADFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIV
Query Conservation      

             
  
                                                         
Alig confidence 













































.
































Template Conservation    



             
  
           
   
   
   .           
  
                  
Template Sequence  LKIPIMTLDRELESTSLPSITVDNEEAAYIATKRVLESTCKEVGLL. LANPNISTTIGRKNGYNKAISEFDLNVNPSLIH
Template Known Secondary structure  TTS
SS

TT




TTT

S.

TTSTT



GGG
Template Predicted Secondary structure 
















.













Template SS confidence 















































































   139140.........150.........160.........170.........180.... .....190.........200.........210.......
 
   218.220.........230...... ...240.........250.........260.........270.........280.........290...
Predicted Secondary structure 




....





























Query SS confidence 


















. . . .
























































Query Sequence  QGDFEPESGYRAMQQILSQ. . . . PHRPTAVFCGGDIMAMGALCAADEMGLRVPQDVSLIGYDNVRNARYFTPALTTIHQP
Query Conservation                  
  ....     
     
  
      
   
  

 

 


 
         
 



   
Alig confidence 


















....
























































Template Conservation                                       
                

 
               



   
Template Sequence  YSDQQLGTNAQIYSGYEATKTLLSKGIKGIVATNHLLLLGALQAIKESEKEIKKDVIIVGFDDSYWNEIYTPKLTVISQP
Template Known Secondary structure 

SS
STT


SSS

BTTTBS

SSS



Template Predicted Secondary structure 
































Template SS confidence 















































































   218.220.........230.........240.........250.........260.........270.........280.........290.......
 
   294.....300.........310.........320.........330...
Predicted Secondary structure 











Query SS confidence 







































Query Sequence  KDSLGETAFNMLLDRIVNKREEPQSIEVHPRLIERRSVAD
Query Conservation      
  

  
   
           
   

 
 
   
Alig confidence 






















..














Template Conservation      
  

  
   
 
     ..  
   

 
 

  
Template Sequence  VKEMGQVAAKMIYKLIKGKDVTS. . IKLSTKLIIRESCSF
Template Known Secondary structure  TT




..



STTS
Template Predicted Secondary structure 





..





Template SS confidence 







































   298.300.........310.........320 .........330.....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions