Job Description P0ACP7 Confidence 100.00% Date Thu Jan 5 11:18:40 GMT 2012 Rank 15 Aligned Residues 272 % Identity 24% Template c2o20H_ PDB info PDB header:transcription Chain: H: PDB Molecule:catabolite control protein a; PDBTitle: crystal structure of transcription regulator ccpa of lactococcus2 lactis Resolution 1.90 Å

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		57	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	H	T	K	S	I	G	L	L	A	T	S	S	E	A	A	Y	F	A	E	I	I	E	A	V	E	K	N	C	F	Q	K	G	Y	T	L	I	L	G	N	A	W	N	N	L	E	K	Q	R	A	Y	L	S	M	M	A	Q	K	R	V	D	G	L	L	V	M	C	S	E	Y	P	E	P	L	L	A	M	L	E	E
Query Conservation
Alig confidence																																																																										.
Template Conservation																																																																										.
Template Sequence		K	R	T	T	T	V	G	V	I	L	P	T	I	T	S	T	Y	F	A	A	I	T	R	G	V	D	D	I	A	S	M	Y	K	Y	N	M	I	L	A	N	S	D	N	D	V	E	K	E	E	K	V	L	E	T	F	L	S	K	Q	V	D	G	I	V	Y	M	G	S	S	L	D	E	.	K	I	R	T	S	L	K
Template Known Secondary structure												S		T	T																		T	T									T	T															T	T		S						S	S					.
Template Predicted Secondary structure																																																																										.
Template SS confidence
		61	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.		.	.	.	.	.	.	.
		137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	R	H	I	P	M	V	V	M	D	W	G	E	A	K	A	D	F	T	D	A	V	I	D	N	A	F	E	G	G	Y	M	A	G	R	Y	L	I	E	R	G	H	R	E	I	G	V	I	P	G	P	L	E	R	N	T	G	A	G	R	L	A	G	F	M	K	A	M	E	E	A	M	I	K	V	P	E	S	W	I
Query Conservation
Alig confidence																																																	.
Template Conservation																																																	.
Template Sequence		N	S	R	T	P	V	V	L	V	G	T	I	D	G	D	K	E	I	P	S	V	N	I	D	Y	H	L	A	A	Y	Q	S	T	K	K	L	I	D	S	G	N	K	K	I	A	Y	I	.	M	G	S	L	K	D	V	E	N	T	E	R	M	V	G	Y	Q	E	A	L	L	E	A	N	I	E	F	D	E	N	L	V
Template Known Secondary structure				T							S				S	S	S		S																					T	T		S	S					.		S		T	T	S																	T	T					G	G	G
Template Predicted Secondary structure																																																	.
Template SS confidence
		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.		.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	Q	G	D	F	E	P	E	S	G	Y	R	A	M	Q	Q	I	L	S	Q	P	H	R	P	T	A	V	F	C	G	G	D	I	M	A	M	G	A	L	C	A	A	D	E	M	G	L	R	V	P	Q	D	V	S	L	I	G	Y	D	N	V	R	N	A	R	Y	F	T	P	A	L	T	T	I	H	Q	P	K	D	S
Query Conservation
Alig confidence																					.	.
Template Conservation																					.	.
Template Sequence		F	E	G	N	Y	S	Y	E	Q	G	K	A	L	A	E	R	L	L	E	.	.	R	G	A	T	S	A	V	V	S	H	D	T	V	A	V	G	L	L	S	A	M	M	D	K	G	V	K	V	P	E	D	F	E	I	I	S	G	A	N	S	P	I	T	Q	Y	T	Y	P	T	L	T	S	V	N	Q	P	L	Y	D
Template Known Secondary structure				S			S						T	T							.	.	T	T		S					S	S															T			T	T	T	T						S	S			G	G	G	G	G		S	S
Template Predicted Secondary structure																					.	.
Template SS confidence
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.			.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
		297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	E	T	A	F	N	M	L	L	D	R	I	V	N	K	R	E	E	P	Q	S	I	E	V	H	P	R	L	I	E	R	R	S	V	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	G	A	V	A	M	R	L	L	T	K	L	M	L	K	E	D	V	E	Q	N	Q	L	V	L	D	H	E	I	F	S	R	R	S	T	K
Template Known Secondary structure															T	T				S														T	T
Template Predicted Secondary structure
Template SS confidence
		297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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