Job Description P33234 Confidence 100.00% Date Thu Jan 5 11:51:34 GMT 2012 Rank 1 Aligned Residues 230 % Identity 18% Template c3gbgA_ PDB info PDB header:transcription regulator Chain: A: PDB Molecule:tcp pilus virulence regulatory protein; PDBTitle: crystal structure of toxt from vibrio cholerae o395 Resolution 1.90 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.		.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.						.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
Predicted Secondary structure																							.																															.	.	.	.	.
Query SS confidence																							.																															.	.	.	.	.
Query Sequence		R	I	C	S	D	Q	P	C	I	V	L	L	T	E	K	D	V	W	I	R	V	.	N	G	K	E	P	I	S	L	K	A	N	H	M	A	L	L	N	C	E	N	N	I	I	D	V	S	S	L	N	N	.	.	.	.	.	T	L	V	A	H	I	S	H	D	I	I	K	D	Y	L	R	F	L	N	K	D	L	S
Query Conservation																							.																															.	.	.	.	.
Alig confidence																							.																															.	.	.	.	.																						.	.
Template Conservation																																																																																.	.
Template Sequence		N	L	Y	I	N	D	Y	K	M	F	W	I	D	S	G	I	A	K	L	I	D	K	N	C	L	V	S	Y	E	I	N	S	S	S	I	I	L	L	K	K	N	S	I	Q	R	F	S	L	T	S	L	S	D	E	N	I	N	V	S	V	I	T	I	S	D	S	F	I	R	S	L	K	S	Y	I	L	G	N	.	.
Template Known Secondary structure						S	S							S	S	S							T	T	T	T							T	T							T	T												S	S																									.	.
Template Predicted Secondary structure																																																																																.	.
Template SS confidence
		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	I	P	V	W	Q	R	S	A	T	P	I	L	T	L	P	C	L	T	P	D	V	F	R	V	A	A	Q	H	S	M	M	P	A	E	T	E	S	E	K	E	R	T	R	A	L	L	F	T	V	L	S	R	F	L	D	S	K	K	F	V	S	L	M	M	Y	M	L	R	N	C	V	S	D	S	V	Y	Q	I	I
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.																																													.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.																																													.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	K	D	L	L	L	W	N	C	E	H	N	D	I	A	V	L	S	E	V	V	N	G	F	R	E	I	N	Y	S	D	E	F	L	K	V	F	F	S	G	F	F	S	K	V	.	.	.	E	K	K	Y	N	S	I	F	I	T	D	D	L	D	A	M	E	K	I	S	C	L	V
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.										S	S										T	T	T	S	S																				.	.	.	T	T	T	S	S	S		S	S			T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.																																													.	.	.
Template SS confidence
												112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.				.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	S	D	I	H	K	D	W	N	L	S	M	V	A	S	C	L	C	L	S	P	S	L	L	K	K	K	L	K	S	E	N	T	S	Y	S	Q	I	I	T	T	C	R	M	R	Y	A	V	N	E	L	M	M	D	G	K	N	I	S	Q	V	S	Q	S	C	G	Y	N	S	T	S	Y	F	I	S	V	F	K	D	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	S	D	I	T	R	N	W	R	W	A	D	I	C	G	E	L	R	T	N	R	M	I	L	K	K	E	L	E	S	R	G	V	K	F	R	E	L	I	N	S	I	R	I	S	Y	S	I	S	L	M	K	T	G	E	F	K	I	K	Q	I	A	Y	Q	S	G	F	A	S	V	S	Y	F	S	T	V	F	K	S	T
Template Known Secondary structure				T	T	T	S												T												T	T	T																						T											T	T		S
Template Predicted Secondary structure
Template SS confidence
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
		236	.	.	.	240	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	G	M	T	P	L	H	Y	V	S	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	N	V	A	P	S	E	Y	L	F	M
Template Known Secondary structure			S	S
Template Predicted Secondary structure
Template SS confidence
		259	260	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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