Job Description P67729 Confidence 100.00% Date Thu Jan 5 12:10:50 GMT 2012 Rank 4 Aligned Residues 401 % Identity 17% Template d1kpla_ SCOP info Clc chloride channel Clc chloride channel Clc chloride channel Resolution 3.00

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.			80	.	.	.	.	.
Predicted Secondary structure																																																																										.	.
Query SS confidence																																																																										.	.
Query Sequence		T	M	L	L	L	S	L	P	A	V	A	I	G	I	A	S	S	L	I	L	I	V	V	M	K	I	A	S	V	L	Q	N	L	L	W	Q	R	L	P	G	T	L	G	I	A	Q	D	S	P	L	W	I	I	G	V	L	T	L	T	G	I	A	V	G	L	V	I	R	F	S	Q	G	.	.	H	A	G	P	D	P
Query Conservation																																																																										.	.
Alig confidence																																																																										.	.
Template Conservation
Template Sequence		T	P	L	A	I	L	F	M	A	A	V	V	G	T	L	T	G	L	V	G	V	A	F	E	K	A	V	S	W	V	Q	N	M	R	I	G	A	L	V	Q	V	A	D	H	A	F	L	L	W	P	L	A	F	I	L	S	A	L	L	A	M	V	G	Y	F	L	V	R	K	F	A	P	E	A	G	G	S	G	I	P
Template Known Secondary structure																																						T	T	T	G	G	G	G																											T		G	G	G	S	B		S
Template Predicted Secondary structure
Template SS confidence
		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
		86	.	.	.	90	.	.	.				.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.			.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure										.	.	.																																														.	.
Query SS confidence										.	.	.																																														.	.
Query Sequence		A	C	E	P	L	I	G	A	.	.	.	P	V	P	P	S	A	L	P	G	L	I	V	A	L	I	L	G	L	A	G	G	V	S	L	G	P	E	H	P	I	M	T	V	N	I	A	L	A	V	A	I	G	A	R	L	.	.	L	P	R	V	N	R	M	E	W	T	I	L	A	S	A	G	T	I	G	A	L	F
Query Conservation										.	.	.																																														.	.
Alig confidence										.	.	.																																														.	.
Template Conservation
Template Sequence		E	I	E	G	A	L	E	E	L	R	P	V	R	W	W	R	V	L	P	V	K	F	I	G	G	M	G	T	L	G	A	G	M	V	L	G	R	E	G	P	T	V	Q	I	G	G	N	L	G	R	M	V	L	D	V	F	R	M	R	S	A	E	A	R	H	T	L	L	A	T	G	A	A	A	G	L	S	A	A	F
Template Known Secondary structure								T	T	S	S																					T	T		S		B	S																		T	T	T
Template Predicted Secondary structure
Template SS confidence
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		G	T	P	V	A	A	A	L	I	F	S	Q	T	L	N	G	S	S	E	V	P	L	W	D	R	L	F	A	P	L	M	A	A	A	A	G	A	L	T	T	G	L	F	F	H	P	H	F	S	L	P	I	A	H	Y	G	Q	M	E	M	T	D	I	L	S	G	A	I	V	A	A	I	A	I	A	A	G	M	V	A
Query Conservation
Alig confidence																								.
Template Conservation																								.
Template Sequence		N	A	P	L	A	G	I	L	F	I	I	E	E	M	R	P	Q	F	R	Y	N	L	.	I	S	I	K	A	V	F	T	G	V	I	M	S	S	I	V	F	R	I	F	N	G	E	A	P	I	I	E	V	G	K	L	S	D	A	P	V	N	T	L	W	L	Y	L	I	L	G	I	I	F	G	V	V	G	P	V	F
Template Known Secondary structure		T												T	T	S		T	T	S				.																							S			S	S
Template Predicted Secondary structure																								.
Template SS confidence
		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.		.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.					.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.
Query SS confidence																			.	.	.	.
Query Sequence		V	W	C	L	P	R	L	H	A	M	M	H	Q	M	K	N	P	.	.	.	.	V	L	V	L	G	I	G	G	F	I	L	G	I	L	G	V	I	G	G	P	V	S	L	F	K	G	L	D	E	M	Q	Q	M	V	A	N	Q	A	F	S	T	S	D	Y	F	L	L	A	V	I	K	L	A	A	L	V	V	A	A
Query Conservation																			.	.	.	.
Alig confidence																			.	.	.	.																																			.
Template Conservation																																																									.
Template Sequence		N	S	L	V	L	R	T	Q	D	M	F	Q	R	F	H	G	G	E	I	K	K	W	V	L	M	G	G	A	I	G	G	L	C	G	I	L	G	L	I	E	P	A	A	A	G	G	G	F	N	L	I	P	I	A	A	.	A	G	N	F	S	V	G	L	L	L	F	I	F	I	T	R	V	V	T	T	L	L	C	F
Template Known Secondary structure																	T	T																						S	S	G	G	G	S	S	S	S	T	T	T						.	T	T
Template Predicted Secondary structure																																																									.
Template SS confidence
		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.		.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.							.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390
Predicted Secondary structure																													.	.	.	.	.	.
Query SS confidence																													.	.	.	.	.	.
Query Sequence		A	S	G	F	R	G	G	R	I	F	P	A	V	F	V	G	V	A	L	G	L	M	L	H	E	H	V	.	.	.	.	.	.	P	A	V	P	A	A	I	T	V	S	C	A	I	L	G	I	V	L	V	V	T	R	D	G	W	L	S	L	F	M	A	A	V	V	V	P	N	T	T	L	L	P	L	L	C	I	V
Query Conservation																													.	.	.	.	.	.
Alig confidence																													.	.	.	.	.	.
Template Conservation
Template Sequence		S	S	G	A	P	G	G	I	F	A	P	M	L	A	L	G	T	L	L	G	T	A	F	G	M	A	A	A	V	L	F	P	Q	Y	H	L	E	A	G	T	F	A	I	A	G	M	G	A	L	M	A	A	S	V	R	A	P	L	T	G	I	V	L	V	L	E	M	T	D	N	Y	Q	L	I	L	P	M	I	I	T
Template Known Secondary structure				T		B	S	B	S																								G	G	G													T							T																	G	G	G
Template Predicted Secondary structure
Template SS confidence
		349	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.
		391	.	.	.	.	.	.	.				.	400	.	.	.	.	.	.	.	.	.	410
Predicted Secondary structure										.	.	.
Query SS confidence										.	.	.
Query Sequence		M	L	P	A	W	L	L	L	.	.	.	A	G	K	P	M	M	M	V	N	R	P	K
Query Conservation										.	.	.
Alig confidence										.	.	.
Template Conservation
Template Sequence		C	L	G	A	T	L	L	A	Q	F	L	G	G	K	P	L	Y	S	T	I	L	A	R
Template Known Secondary structure												T	T
Template Predicted Secondary structure
Template SS confidence
		429	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.