Job Description P67729 Confidence 100.00% Date Thu Jan 5 12:10:50 GMT 2012 Rank 5 Aligned Residues 382 % Identity 16% Template c3orgB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:cmclc; PDBTitle: crystal structure of a eukaryotic clc transporter Resolution 3.50 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.			80	.	.	.	.
Predicted Secondary structure																																																																											.	.
Query SS confidence																																																																											.	.
Query Sequence		R	T	M	L	L	L	S	L	P	A	V	A	I	G	I	A	S	S	L	I	L	I	V	V	M	K	I	A	S	V	L	Q	N	L	L	W	Q	R	L	P	G	T	L	G	I	A	Q	D	S	P	L	W	I	I	G	V	L	T	L	T	G	I	A	V	G	L	V	I	R	F	S	Q	G	.	.	H	A	G	P	D
Query Conservation																																																																											.	.
Alig confidence																																														.	.																												.	.
Template Conservation																																														.	.
Template Sequence		M	Y	L	L	R	L	V	C	F	L	T	L	L	G	V	T	A	A	L	F	I	F	A	V	D	L	A	V	H	G	L	E	E	L	R	M	K	I	S	R	L	A	G	R	.	.	F	A	G	Y	I	L	Y	V	V	S	G	V	A	L	C	L	L	S	T	F	W	C	A	V	L	S	T	E	A	E	G	S	G	L
Template Known Secondary structure																																											S			.	.																									S		G	G	G		B		S
Template Predicted Secondary structure																																														.	.
Template SS confidence
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.			.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
		85	.	.	.	.								90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.						.		.	140	.	.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure							.	.	.	.	.	.	.																																																	.	.	.	.	.		.
Query SS confidence							.	.	.	.	.	.	.																																																	.	.	.	.	.		.
Query Sequence		P	A	C	E	P	.	.	.	.	.	.	.	L	I	G	A	P	V	P	P	S	A	L	P	G	L	I	V	A	L	I	L	G	L	A	G	G	V	S	L	G	P	E	H	P	I	M	T	V	N	I	A	L	A	V	A	I	G	A	R	.	.	.	.	.	L	.	L	P	R	V	N	R	M	E	W	T	I	L	A
Query Conservation							.	.	.	.	.	.	.																																																	.	.	.	.	.		.
Alig confidence							.	.	.	.	.	.	.																																																	.	.	.	.	.		.
Template Conservation
Template Sequence		P	Q	M	K	S	I	L	S	G	F	Y	D	K	M	R	S	A	L	E	L	R	V	L	F	A	K	A	L	G	L	I	C	A	I	G	G	G	L	P	V	G	W	E	G	P	N	V	H	I	A	C	I	I	A	H	Q	F	Y	R	L	G	V	F	K	E	L	C	T	D	R	A	L	R	L	Q	T	L	A	A	A
Template Known Secondary structure									T	T	T					G	G	G	G	S																	T	T		S		B	S																T	T	S	T	T	T	T					S
Template Predicted Secondary structure
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	A	G	T	I	G	A	L	F	G	T	P	V	A	A	A	L	I	F	S	Q	T	L	N	G	S	S	E	V	P	L	W	D	R	L	F	A	P	L	M	A	A	A	A	G	A	L	T	T	G	L	F	F	H	P	H	F	S	L	P	I	A	H	Y	G	Q	M	E	M	T	D	I	L	S	G	A	I	V	A	A
Query Conservation
Alig confidence																																	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		C	A	V	G	L	A	S	S	F	G	A	P	L	G	G	V	L	Y	S	I	E	T	I	A	S	F	Y	L	V	Q	A	.	.	.	F	W	K	G	V	L	S	A	L	S	G	A	I	V	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	L	D	V	S	R	T	Q	T	L	L	Y	A	I	L	G	A
Template Known Secondary structure											T													T		S	S			T	T		.	.	.															T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T						S		T
Template Predicted Secondary structure																																	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.				.	280	.	.	.	.	.	.	.	.	.	290	.	.	.															.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	A	I	A	A	G	M	V	A	V	W	C	L	P	R	L	H	A	M	M	H	Q	M	K	N	P	V	L	V	L	G	I	G	G	F	I	L	G	I	L	G	V	I	G	G	P	V	S	L	F	K	G	L	D	E	M	Q	Q	M	V	A	N	Q	A	F	S	T	S	D	Y	F	L	L	A	V	I	K	L	A	A
Query Conservation
Alig confidence																																															.	.	.	.																	.	.	.	.
Template Conservation																																															.	.	.	.																	.	.	.	.
Template Sequence		L	M	G	V	L	G	A	L	F	I	R	C	V	R	S	I	Y	E	L	R	M	R	H	Y	P	G	T	N	R	Y	F	L	V	G	V	V	A	L	F	A	S	A	L	Q	Y	.	.	.	.	P	F	P	R	A	T	I	N	D	L	F	K	A	V	T	E	.	.	.	.	L	I	L	M	P	I	I	K	F	I	L
Template Known Secondary structure																							S	S	S	T	T			T															T	T	.	.	.	.	T											S					.	.	.	.	S	S
Template Predicted Secondary structure																																															.	.	.	.																	.	.	.	.
Template SS confidence
		329	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.					.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.					390	.	.	.	.	.	.	.	.	.	400
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.						.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.
Predicted Secondary structure																																		.	.	.	.	.
Query SS confidence																																		.	.	.	.	.
Query Sequence		L	V	V	A	A	A	S	G	F	R	G	G	R	I	F	P	A	V	F	V	G	V	A	L	G	L	M	L	H	E	H	V	.	.	.	.	.	P	A	V	P	A	A	I	T	V	S	C	A	I	L	G	I	V	L	V	V	T	R	D	G	W	L	S	L	F	M	A	A	V	V	V	P	N	T	T	L	L	P	L
Query Conservation																																		.	.	.	.	.
Alig confidence																																		.	.	.	.	.																							.
Template Conservation																																																													.
Template Sequence		V	A	L	S	I	G	L	P	L	P	A	G	V	F	V	P	S	F	L	I	G	A	G	F	G	R	L	Y	G	E	L	M	R	V	V	F	G	N	A	I	V	P	G	S	Y	A	V	V	G	A	A	A	F	T	A	G	V	T	R	.	A	L	S	C	A	V	I	I	F	E	V	T	G	Q	I	R	H	L	V	P
Template Known Secondary structure						T	T	S	S	S	B		B																										T	T	S																				.		T	T									T				S		S
Template Predicted Secondary structure																																																													.
Template SS confidence
		417	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.		.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.
		387	.	.	390	.	.	.	.	.	.	.	.	.			400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.
Predicted Secondary structure															.	.
Query SS confidence															.	.
Query Sequence		L	C	I	V	M	L	P	A	W	L	L	L	A	.	.	G	K	P	M	M	M	V	N	R	P	K	Q	Q	P	P	H	D
Query Conservation															.	.
Alig confidence															.	.
Template Conservation
Template Sequence		V	L	I	S	V	L	L	A	V	I	V	G	N	A	F	N	R	S	L	Y	E	T	L	V	L	M	K	H	L	P	Y	M
Template Known Secondary structure																												T	T
Template Predicted Secondary structure
Template SS confidence
		496	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.