Job Description P67729 Confidence 100.00% Date Thu Jan 5 12:10:50 GMT 2012 Rank 3 Aligned Residues 408 % Identity 13% Template c3nd0A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:sll0855 protein; PDBTitle: x-ray crystal structure of a slow cyanobacterial cl-/h+ antiporter Resolution 3.20 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																																.	.
Query SS confidence																																																																																.	.
Query Sequence		L	H	P	R	A	R	T	M	L	L	L	S	L	P	A	V	A	I	G	I	A	S	S	L	I	L	I	V	V	M	K	I	A	S	V	L	Q	N	L	L	W	Q	R	L	P	G	T	L	G	I	A	Q	D	S	P	L	W	I	I	G	V	L	T	L	T	G	I	A	V	G	L	V	I	R	F	S	Q	G	.	.
Query Conservation																																																																																.	.
Alig confidence						.	.	.	.	.	.																																																																					.	.
Template Conservation						.	.	.	.	.	.
Template Sequence		L	H	P	R	.	.	.	.	.	.	T	L	V	A	A	I	V	V	G	L	I	T	G	V	L	G	A	G	F	K	S	A	V	N	N	M	L	Q	W	R	S	Q	L	A	Q	I	L	A	P	I	P	P	L	A	W	L	V	T	A	L	I	S	G	G	M	V	A	L	S	F	W	L	M	K	R	F	A	P	D	T
Template Known Secondary structure						.	.	.	.	.	.																																					S	T	T	S		T																						T	T	T		G	G	G
Template Predicted Secondary structure						.	.	.	.	.	.
Template SS confidence
		27	.	.	30							.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
		80	.	.	.	.	.	.	.	.	.	90	.	.	.				.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.		.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure																.	.	.																																														.
Query SS confidence																.	.	.																																														.
Query Sequence		H	A	G	P	D	P	A	C	E	P	L	I	G	A	.	.	.	P	V	P	P	S	A	L	P	G	L	I	V	A	L	I	L	G	L	A	G	G	V	S	L	G	P	E	H	P	I	M	T	V	N	I	A	L	A	V	A	I	G	A	R	L	.	L	P	R	V	N	R	M	E	W	T	I	L	A	S	A	G	T
Query Conservation																.	.	.																																														.
Alig confidence																.	.	.																																														.
Template Conservation
Template Sequence		S	G	S	G	I	P	Q	I	E	G	H	L	E	G	K	L	P	L	V	W	Q	R	V	L	P	I	K	L	V	G	G	F	L	S	L	G	A	G	M	L	A	G	F	E	G	P	T	I	Q	M	G	G	S	I	G	Q	M	T	G	G	W	F	K	A	T	Q	E	N	Q	R	I	L	I	A	V	G	A	G	A	G
Template Known Secondary structure		S	B		S								T	T	S	S	S																					T	T		S			T																			T	T
Template Predicted Secondary structure
Template SS confidence
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	G	A	L	F	G	T	P	V	A	A	A	L	I	F	S	Q	T	L	N	G	S	S	E	V	P	L	W	D	R	L	F	A	P	L	M	A	A	A	A	G	A	L	T	T	G	L	F	F	H	P	H	F	S	L	P	I	A	H	Y	G	Q	M	E	M	T	D	I	L	S	G	A	I	V	A	A	I	A	I	A
Query Conservation
Alig confidence																													.
Template Conservation																													.
Template Sequence		L	A	T	A	F	N	A	P	L	A	G	V	A	L	I	G	E	E	M	H	P	R	F	R	S	Q	T	.	L	A	Y	H	S	L	L	F	G	C	V	M	A	T	I	I	L	R	M	I	R	G	Q	S	A	I	I	S	L	T	E	F	K	R	V	P	L	D	S	L	W	M	F	I	I	L	G	I	L	F	G	V
Template Known Secondary structure							T											S	S	S					S	S			.	T	T																			T		S	S		S	S			T	T						G	G	G
Template Predicted Secondary structure																													.
Template SS confidence
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.		.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.		.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure																						.
Query SS confidence																						.
Query Sequence		A	G	M	V	A	V	W	C	L	P	R	L	H	A	M	M	H	Q	M	K	.	N	P	V	L	V	L	G	I	G	G	F	I	L	G	I	L	G	V	I	G	G	P	V	S	L	F	K	G	L	D	E	M	Q	Q	M	V	A	N	Q	A	F	S	T	S	D	Y	F	L	L	A	V	I	K	L	A	A	L	V	V
Query Conservation																						.
Alig confidence																						.																																					.
Template Conservation																																																											.
Template Sequence		M	G	Y	T	F	N	R	G	L	F	K	V	L	D	W	F	D	R	L	P	P	L	A	T	K	W	K	G	F	L	L	G	S	I	I	G	I	L	S	L	F	P	L	P	L	T	D	G	G	D	N	A	V	L	W	A	F	.	N	S	Q	S	H	F	S	T	L	I	L	V	F	C	G	R	F	L	L	T	L	I
Template Known Secondary structure																			T																					T	T	S	S	S	S		S	S	S	S								T	.	T	S
Template Predicted Secondary structure																																																											.
Template SS confidence
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.		.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.
		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.							.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.
Predicted Secondary structure																																	.	.	.	.	.	.
Query SS confidence																																	.	.	.	.	.	.
Query Sequence		A	A	A	S	G	F	R	G	G	R	I	F	P	A	V	F	V	G	V	A	L	G	L	M	L	H	E	H	V	P	A	.	.	.	.	.	.	V	P	A	A	I	T	V	S	C	A	I	L	G	I	V	L	V	V	T	R	D	G	W	L	S	L	F	M	A	A	V	V	V	P	N	T	T	L	L	P	L	L	C
Query Conservation																																	.	.	.	.	.	.
Alig confidence																																	.	.	.	.	.	.
Template Conservation
Template Sequence		C	Y	G	S	G	A	I	G	G	I	F	A	P	M	L	G	I	A	S	I	V	S	V	A	M	A	R	H	F	H	L	L	F	P	S	Q	I	P	E	P	A	V	M	A	I	A	G	M	G	A	L	V	A	A	T	V	R	A	P	L	T	A	I	L	L	T	I	E	M	T	D	N	Y	F	V	I	L	P	L	L
Template Known Secondary structure					T	T		B			S																								T	T	T		S	S	T							T	T	S								S												T	T				T	T
Template Predicted Secondary structure
Template SS confidence
		339	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.
		389	390	.	.	.	.	.	.	.	.				.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.
Predicted Secondary structure												.	.	.
Query SS confidence												.	.	.
Query Sequence		I	V	M	L	P	A	W	L	L	L	.	.	.	A	G	K	P	M	M	M	V	N	R	P	K	Q	Q	P	P	H	D	N
Query Conservation												.	.	.
Alig confidence												.	.	.
Template Conservation
Template Sequence		V	T	C	L	V	A	S	V	V	A	E	A	L	G	G	K	P	I	Y	T	V	L	L	E	R	T	L	A	K	Q	N	R
Template Known Secondary structure												T	T	S															T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		419	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450