Return to main results Retrieve Phyre Job Id

Job DescriptionP0A9R7
Confidence100.00%DateThu Jan 5 11:11:07 GMT 2012
Rank58Aligned Residues195
% Identity25%Templatec3pihA_
PDB info PDB header:hydrolase/dnaChain: A: PDB Molecule:uvrabc system protein a; PDBTitle: t. maritima uvra in complex with fluorescein-modified dna
Resolution2.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   18.20.........30.........40..... ....50.........60.........70.........80.........90
Predicted Secondary structure 











.





















......
Query SS confidence 



























.












































. . . . . .
Query Sequence  LQGVTFHMQPGEMAFLTGHSGAGKSTLL. KLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHL. . . . . .
Query Conservation 
  

  
  


  
 
 








.  
 
      
 
   
  
          

  
  
 
    ......
Alig confidence 



























.



























...













......
Template Conservation 
  
   
  
   

 
 








   
   
                     ...    
  
 
 

    

 
Template Sequence  LKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHE. . . NIDKMIAIDQSPIGRTPRSN
Template Known Secondary structure 

SSSS
STTSST








S
GG...G


S





TT

Template Predicted Secondary structure 




























...









Template SS confidence 















































































   600.........610.........620.........630.........640.........650...... ...660.........670......
 
  
Predicted Secondary structure  ................................................................................
Query SS confidence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation  ................................................................................
Template Conservation          
 

 

     
          
 
   
      
 
        
           
 
     
 
  
Template Sequence  PATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITY
Template Known Secondary structure  SSTTSSS

GGGG
TTSTTTB
TTTTTSS

TTS


TTTTTS
B
TTGGG

B
Template Predicted Secondary structure 











































Template SS confidence 















































































   677..680.........690.........700.........710.........720.........730.........740.........750......
 
   91........100.........110.........120.........130 .........140.........150....... ..
Predicted Secondary structure  .......











.







...
Query SS confidence  . . . . . . .







































.


























. . .

Query Sequence  . . . . . . . LMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDK. AKNFPIQLSGGEQQRVGIARAVVNKPA. . . VL
Query Conservation  .......    

 
 
                     
        .       



  


 

 

   
 ...

Alig confidence  .......











......





















.


























...

Template Conservation      
   
  

 

   ......          
  
  


    
      








 

 

   
    

Template Sequence  KGKNISDILDMTVDEALEF. . . . . . FKNIPSIKRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLY
Template Known Secondary structure  TTB
SSB......TTT
TTGGGSBTT

STT

TS


SS
Template Predicted Secondary structure 



......




















Template SS confidence 















































































   757..760.........770..... ....780.........790.........800.........810.........820.........830
 
   160.........170.........180.........190.........200.........210 .........220..
Predicted Secondary structure 













......





Query SS confidence 


















































. . . . . .











Query Sequence  LADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDINLISRRSYRMLTL. . . . . . SDGHLHGGVGHE
Query Conservation 




  


      
   
      
 


  

         
 
 

......  
 
   
  
Alig confidence 










































.






......











Template Conservation 









  
   
   
  
   
 








  
  .

 

 


  
   
 

  


 
Template Sequence  ILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKN. ADHIIDLGPEGGKEGGYIVATGTPE
Template Known Secondary structure  STTTT

TT



TT.
SSSSGGG

S
Template Predicted Secondary structure 











.












Template SS confidence 




































































   831........840.........850.........860.........870... ......880.........890........
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions