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Job DescriptionP0A9R7
Confidence96.87%DateThu Jan 5 11:11:07 GMT 2012
Rank189Aligned Residues118
% Identity29%Templatec1xwiA_
PDB info PDB header:protein transportChain: A: PDB Molecule:skd1 protein; PDBTitle: crystal structure of vps4b
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   26...30.........40.........50.........60.........70.........80.........90.........100.....
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Query Sequence  QPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLI
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Template Sequence  TPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLG. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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   165....170.........180.........190.........200.........210
 
   106...110.........120.........130.........140.........150.........160.... .....170........
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Query Sequence  IAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEP. . . . . . . TGNLDDALSEGILR
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTE
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   211........220.........230.........240.........250.......
 
   179180....... ..190......... 200.........210
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Query Sequence  LFEEFNRVG. . . . . VTVLMATHDINL. . . . ISRRSYRMLTL
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Template Sequence  FLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYI
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   258.260.........270.........280.........290........
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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