Job Description P37744 Confidence 96.07% Date Thu Jan 5 11:57:17 GMT 2012 Rank 74 Aligned Residues 187 % Identity 12% Template c2ffuA_ PDB info PDB header:transferase Chain: A: PDB Molecule:polypeptide n-acetylgalactosaminyltransferase 2; PDBTitle: crystal structure of human ppgalnact-2 complexed with udp2 and ea2 Resolution 1.64 Å

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		28	.	30	.	.	.	.	.	.			.	.	.	40	.	.	.	.	.	.	.	.	.	50					.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
Predicted Secondary structure											.	.															.	.	.	.
Query SS confidence											.	.															.	.	.	.
Query Sequence		L	L	P	I	Y	D	K	P	M	.	.	I	Y	Y	P	L	S	T	L	M	L	A	G	I	R	.	.	.	.	D	I	L	I	I	S	T	P	Q	D	T	P	R	F	Q	Q	L	L	G	D	G	S	Q	W	G	L	N	L	Q	Y	K	V	Q	P	S	P	D	G	L	A	Q	A	F	I	I	G	E	E	F	I	G
Query Conservation											.	.															.	.	.	.
Alig confidence											.	.															.	.	.	.																								.	.	.	.
Template Conservation																																																						.	.	.	.
Template Sequence		V	I	T	F	H	N	E	A	R	S	A	L	L	R	T	V	V	S	V	L	K	K	S	P	P	H	L	I	K	E	I	I	L	V	D	D	Y	S	N	D	P	E	D	G	A	L	L	G	K	I	E	K	.	.	.	.	V	R	V	L	R	N	D	R	R	E	G	L	M	R	S	R	V	R	G	A	D	A	A	Q
Template Known Secondary structure						S	S																	S		G	G	G										S		S		T					G	G	G	G	B	T	T	.	.	.	.							S	S
Template Predicted Secondary structure																																																						.	.	.	.
Template SS confidence
		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.					.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.								.	160	.	.	.	.
Predicted Secondary structure																																																											.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																											.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.
Query Sequence		G	D	D	C	A	L	V	L	G	D	N	I	F	Y	G	H	D	L	P	K	L	M	E	A	A	V	N	K	E	S	G	A	T	V	F	A	Y	H	V	N	D	P	E	R	Y	G	V	V	E	F	D	K	N	G	T	A	I	.	.	.	.	.	.	.	S	L	E	E	K	P	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																											.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.
Alig confidence																																																											.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	K	V	L	T	F	L	D	S	H	C	E	C	N	E	H	W	L	E	P	L	L	E	R	V	A	E	D	R	T	R	V	V	S	P	I	I	D	V	I	N	M	D	N	F	Q	Y	V	G	A	S	A	D	L	K	G	G	F	D	W	N	L	V	F	K	W	D	Y	M	T	P	E	Q	R	R	S	R	Q	G	N
Template Known Secondary structure		S	S							S	S					T	T													T	T												T	T	T								S	S							T	T																T	S	S
Template Predicted Secondary structure
Template SS confidence
		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
				165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.		.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.																																		.
Query SS confidence		.	.																																		.
Query Sequence		.	.	L	E	P	K	S	N	Y	A	V	T	G	L	Y	F	Y	D	N	D	V	V	Q	M	A	K	N	L	K	P	S	A	R	G	E	.	L	E	I	T	D	I	N	R	I	Y	L	E	Q	G	R	L	S	V	A	M	M
Query Conservation		.	.																																		.
Alig confidence		.	.																																		.
Template Conservation
Template Sequence		P	V	A	P	I	K	T	P	M	I	A	G	G	L	F	V	M	D	K	F	Y	F	E	E	L	G	K	Y	D	M	M	M	D	V	W	G	G	E	N	L	E	I	S	F	R	V	W	Q	C	G	G	S	L	E	I	I	P
Template Known Secondary structure		T	T	S					S	S			S	S	S											T	T				T	T			S	S	S	S												T	T
Template Predicted Secondary structure
Template SS confidence
		297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions