Job Description P75959 Confidence 99.16% Date Thu Jan 5 12:16:28 GMT 2012 Rank 54 Aligned Residues 271 % Identity 13% Template c2ivoC_ PDB info PDB header:hydrolase Chain: C: PDB Molecule:up1; PDBTitle: structure of up1 protein Resolution 2.9 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		1	.		.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.													.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.		.	.
Predicted Secondary structure				.																																		.	.	.	.	.	.	.	.	.	.	.	.																														.
Query SS confidence				.																																		.	.	.	.	.	.	.	.	.	.	.	.																														.
Query Sequence		M	Y	.	Y	G	F	D	I	G	G	T	K	I	A	L	G	V	F	D	S	G	R	Q	L	Q	W	E	K	R	V	P	T	P	R	D	S	.	.	.	.	.	.	.	.	.	.	.	.	Y	D	A	F	L	D	A	V	C	E	L	V	A	E	A	D	Q	R	F	G	C	K	G	S	V	G	I	G	I	.	P	G
Query Conservation				.																																		.	.	.	.	.	.	.	.	.	.	.	.																														.
Alig confidence				.																	.																	.	.	.	.	.	.	.	.	.	.	.	.																														.
Template Conservation																					.
Template Sequence		M	L	A	L	G	I	E	G	T	A	H	T	L	G	I	G	I	V	S	.	E	D	K	V	L	A	N	V	F	D	T	L	T	T	E	K	G	G	I	H	P	K	E	A	A	E	H	H	A	R	L	M	K	P	L	L	R	K	A	L	S	E	A	G	V	S	L	D	D	I	D	V	I	A	F	S	Q	G	P	G
Template Known Secondary structure										S	S	S									.	S	S													S	S		S																										T			T	T	T										S	S
Template Predicted Secondary structure																					.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	P	E	T	E	D	G	T	L	Y	A	A	N	V	P	A	A	S	G	K	P	L	R	A	D	L	S	A	R	L	D	R	D	V	R	L	D	N	D	A	N	C	F	A	L	S	E	A	W	D	D	E	F	T	Q	Y	P	L	V	M	G	L	I	L	G	T	G	V	G	G	G	L	I	F	N	G	K	P	I	T
Query Conservation
Alig confidence								.	.	.	.	.	.	.	.	.	.	.																																			.	.	.
Template Conservation								.	.	.	.	.	.	.	.	.	.	.																																			.	.	.
Template Sequence		L	G	P	A	L	R	.	.	.	.	.	.	.	.	.	.	.	V	V	A	T	A	A	R	A	L	A	V	K	Y	R	K	P	I	V	G	V	N	H	C	I	A	H	V	E	I	T	K	M	F	G	.	.	.	V	K	D	P	V	G	L	Y	V	S	G	G	N	T	Q	V	L	A	L	E	G	G	R	Y	R	V
Template Known Secondary structure								.	.	.	.	.	.	.	.	.	.	.													T	T															G	G	G	G	G	T	.	.	.			S								S	S									T	T
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.																																			.	.	.
Template SS confidence
		80	.	.	.	.	.												.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.				120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
		147	.	.	150	.	.	.	.	.	.	.	.										.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.	.	.	.
Query Sequence		G	K	S	Y	I	T	G	E	F	G	H	M	.	.	.	.	.	.	.	.	.	R	L	P	V	D	A	L	T	M	M	G	L	D	F	P	L	R	R	C	G	C	G	Q	H	G	C	I	E	N	Y	L	S	G	R	G	F	A	W	L	Y	Q	H	Y	Y	H	Q	P	L	Q	A	P	E	I	I	A	L	Y	D	Q
Query Conservation														.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.	.																																																					.	.	.	.	.	.	.
Template Conservation																																																																											.	.	.	.	.	.	.
Template Sequence		F	G	E	T	L	D	I	G	I	G	N	A	I	D	V	F	A	R	E	L	G	L	G	F	P	G	G	P	K	V	E	K	L	A	E	K	G	E	K	Y	I	E	L	P	Y	A	V	K	G	M	D	L	S	F	S	G	L	L	T	E	A	I	R	K	Y	R	S	G	K	Y	R	V	E	.	.	.	.	.	.	.
Template Known Secondary structure					B	S	S	S													T	T			S	S											T			S										T	T																	T			S				.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																											.	.	.	.	.	.	.
Template SS confidence
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.				.	.	290	.	.	.	.
Predicted Secondary structure																																																																								.	.	.
Query SS confidence																																																																								.	.	.
Query Sequence		G	D	E	Q	A	R	A	H	V	E	R	Y	L	D	L	L	A	V	C	L	G	N	I	L	T	I	V	D	P	D	L	V	V	I	G	G	G	L	S	N	F	P	A	I	T	T	Q	L	A	D	R	L	P	R	H	L	L	P	V	A	R	V	P	R	I	E	R	A	R	H	.	.	.	G	D	A	G	G	M	R
Query Conservation																																																																								.	.	.
Alig confidence		.	.																																																						.	.	.	.	.	.										.	.	.
Template Conservation		.	.																																																						.	.	.	.	.	.
Template Sequence		.	.	D	L	A	Y	S	F	Q	E	T	A	F	A	A	L	V	E	V	T	E	R	A	V	A	H	T	E	K	D	E	V	V	L	V	G	G	V	A	A	N	N	R	L	R	E	M	L	R	I	M	T	E	D	R	.	.	.	.	.	.	G	I	K	F	F	V	P	P	Y	D	L	C	R	D	N	G	A	M	I
Template Known Secondary structure		.	.																												S						S	G	G	G	G																.	.	.	.	.	.	T								G	G	G	T	S	S		S
Template Predicted Secondary structure		.	.																																																						.	.	.	.	.	.
Template SS confidence
				219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.							.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
		295	.	.	.	.	300	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	A	A	F	L	H	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	Y	T	G	L	R	M
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		291	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions