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Job DescriptionP0A7I4
Confidence100.00%DateThu Jan 5 11:05:43 GMT 2012
Rank16Aligned Residues295
% Identity19%Templatec3p27A_
PDB info PDB header:signaling proteinChain: A: PDB Molecule:elongation factor 1 alpha-like protein; PDBTitle: crystal structure of a translational gtpase (gdp form)
Resolution2.95 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10.........20.........30.........40.........50.........60.........70.........80
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Query Sequence  MTLSPYLQEVAKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYH
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Template Sequence  HDISAFVKSALPHLSFVVLGHVDAGKSTLXGRLLYDLNIV. . . . . . . . . . . NQSQLRKLQRWIXDQTVTVSICTSHFSTH
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   155....160.........170.........180.........190.... .....200.........210.........220...
 
   81........90.........100.........110........ .120.........130...... ...140.........150 ..
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Query Sequence  DCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKG. VEDRTRKLMEVTRLRDTP. ILTFMNKLDRDIRD. . . . . . PM
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Template Sequence  RANFTIVDAPGVPNA. . . . IXGISQADXAILCVDCSTFDLDGQTKEHXLLASSLGIHNLIIAXNKXDNVDWSQQRFEEIK
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   244.....250........ .260.........270.........280.........290.........300.........310.........
 
   153......160.........170.........180.........190.........200.........210.........220.........230..
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Query Sequence  ELLDEVENELKIGCAPITWPIGCGKLFKGVYHLYKDETYLYQSGKGHTIQEVRIVKGLNNPDLDAAVGEDLAQQLRDELE
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Template Sequence  SKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIE. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  T

GGG

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BTTSSB
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   330.........340.........350.........360...
 
   233......240.........250.........260.........270.........280.........290.........300.........310..
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Query Sequence  LVKGASNEFDKELFLAGEITPVFFGTALGNFGVDHMLDGLVEWAPAPMPRQTDTRTVEASEDKFTGFVFKIQANMDPKHR
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Template Sequence  . . . . . . . . . . . . . . . . . . . YTDEVRQWYNGPNLXSTLENAAFKISKEN. . . . . . . EGINKDDPFLFSVLEII. . . . . PSK
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TT

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   364.....370.........380.........390.. .......400......... 410..
 
   313......320.........330.........340.........350.........360....... ..370.........380........
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Query Sequence  DRVAFMRVVSGKYEKGMKLRQVRTAKDVVISDALTFMAGDRSHVEEAYPGDILGL. . . . HNHGTIQIGDTFTQGEMMKFT
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Template Sequence  LALVSGKLESGSIQPGESLTIYPSEQSCIVDKI. QVGSQQHEETDVAIKGDFVTLKLRKAYPEDIQNGDLAASVDYSSIH
Template Known Secondary structure 
S
TT
TTT.
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   418.420.........430.........440.........450 .........460.........470.........480.........490......
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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