Job Description P0A7I4 Confidence 100.00% Date Thu Jan 5 11:05:43 GMT 2012 Rank 33 Aligned Residues 231 % Identity 24% Template c3mcaA_ PDB info PDB header:translation regulation/hydrolase Chain: A: PDB Molecule:elongation factor 1 alpha-like protein; PDBTitle: structure of the dom34-hbs1 complex and implications for its role in2 no-go decay Resolution 2.74 Å

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		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	F	A	I	I	S	H	P	D	A	G	K	T	T	I	T	E	K	V	L	L	F	G	Q	A	I	Q	T	A	G	T	V	K	G	R	G	S	N	Q	H	A	K	S	D	W	M	E	M	E	K	Q	R	G	I	S	I	T	T	S	V	M	Q	F	P	Y	H	D	C	L	V	N	L	L	D	T	P	G	H	E	D
Query Conservation
Alig confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		H	L	V	V	T	G	H	V	D	S	G	K	S	T	M	L	G	R	I	M	F	E	L	G	E	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	G	D	A	P	G	H	R	D
Template Known Secondary structure									S	S	S	T																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						S	S	S
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.																																														.	.	.	.	.	210	.	.	.
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.		.	.	.	140	.	.	.	.	.	.	.	.	.	150				.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
Predicted Secondary structure																																												.															.	.	.
Query SS confidence																																												.															.	.	.
Query Sequence		F	S	E	D	T	Y	R	T	L	T	A	V	D	C	C	L	M	V	I	D	A	A	K	G	V	E	D	R	T	R	K	L	M	E	V	T	R	L	R	D	T	P	.	I	L	T	F	M	N	K	L	D	R	D	I	R	D	.	.	.	P	M	E	L	L	D	E	V	E	N	E	L	K	I	G	C	A	P	I	T
Query Conservation																																												.															.	.	.
Alig confidence																																												.															.	.	.																		.	.	.
Template Conservation																																																																															.	.	.
Template Sequence		F	I	S	G	M	I	A	A	V	L	V	V	D	S	S	Q	N	N	F	E	R	G	F	L	E	N	G	Q	T	R	E	H	A	Y	L	L	R	A	L	G	I	S	E	I	V	V	S	V	N	K	L	D	L	M	S	W	S	E	D	R	F	Q	E	I	K	N	I	V	S	D	F	L	I	K	M	V	G	.	.	.
Template Known Secondary structure											S									S	S	T	T	S		S		S	S											S	S											G	G	G	G	T	T																	T	T	T	S		.	.	.
Template Predicted Secondary structure																																																																															.	.	.
Template SS confidence
		268	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
Predicted Secondary structure
Query SS confidence
Query Sequence		W	P	I	G	C	G	K	L	F	K	G	V	Y	H	L	Y	K	D	E	T	Y	L	Y	Q	S	G	K	G	H	T	I	Q	E	V	R	I	V	K	G	L	N	N	P	D	L	D	A	A	V	G	E	D	L	A	Q	Q	L	R	D	E	L	E	L	V	K	G	A	S	N	E	F	D	K	E	L	F	L	A	G	E
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	K	T	S
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			G	G
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																																																																														352	.	.	.
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.															.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	T	P	V	F	F	G	T	A	L	G	N	F	G	V	D	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	L	D	G	L	V	E	W	A	P	A	P	M	P	R	Q	T	D	T	R	T	V	E	A	S	E	D	K	F	T	G	F	V	F	K	I	Q	A	N	M	D	P	K	H	R	D	R	V	A
Query Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.																.	.	.	.
Template Conservation																																														.	.	.	.	.	.	.	.	.	.																.	.	.	.
Template Sequence		N	V	H	F	V	P	I	S	A	I	S	G	T	N	L	I	Q	K	D	S	S	D	L	Y	K	W	Y	K	G	P	T	L	L	S	A	L	D	Q	L	V	P	P	E	K	.	.	.	.	.	.	.	.	.	.	P	Y	R	K	P	L	R	L	S	I	D	D	V	Y	R	.	.	.	.	S	P	R	S	V	T	V
Template Known Secondary structure		G								S	S	S		S	S	S		S					G	G	G	G	T			S									T	S				S		.	.	.	.	.	.	.	.	.	.	T	T	T	S												.	.	.	.		T	T
Template Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.	.																.	.	.	.
Template SS confidence
		356	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.											400	.	.	.	.	.	.	.	.	.	410	.	.	.	.					.	.	.	.	.	420	.
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.					.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.
Predicted Secondary structure																																																					.	.	.	.
Query SS confidence																																																					.	.	.	.
Query Sequence		F	M	R	V	V	S	G	K	Y	E	K	G	M	K	L	R	Q	V	R	T	A	K	D	V	V	I	S	D	A	L	T	F	M	A	G	D	R	S	H	V	E	E	A	Y	P	G	D	I	L	G	L	.	.	.	.	H	N	H	G	T	I	Q	I	G	D	T	F	T	Q	G	E	M	M	K
Query Conservation																																																					.	.	.	.
Alig confidence																																			.	.	.																.	.	.	.
Template Conservation																																			.	.	.
Template Sequence		T	G	R	V	E	A	G	N	V	Q	V	N	Q	V	L	Y	D	V	S	S	Q	E	D	A	Y	V	K	N	V	I	R	N	S	.	.	.	D	P	S	S	T	W	A	V	A	G	D	T	V	T	L	Q	L	A	D	I	E	V	N	Q	L	R	P	G	D	I	L	S	N	Y	E	N	P	V
Template Known Secondary structure								S				T	T						T	T	T	T											S	S	.	.	.	S		S						T	T								S	S	S		G	G	G			T	T						S	S	S
Template Predicted Secondary structure																																			.	.	.
Template SS confidence
		422	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.				.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions