Job Description P0A7I4 Confidence 98.03% Date Thu Jan 5 11:05:43 GMT 2012 Rank 256 Aligned Residues 142 % Identity 16% Template c3dmdA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:signal recognition particle receptor; PDBTitle: structures and conformations in solution of the signal recognition2 particle receptor from the archaeon pyrococcus furiosus Resolution 2.21 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.		.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																															.																	.	.
Query SS confidence																																																															.																	.	.
Query Sequence		T	L	S	P	Y	L	Q	E	V	A	K	R	R	T	F	A	I	I	S	H	P	D	A	G	K	T	T	I	T	E	K	V	L	L	F	G	Q	A	I	Q	T	A	G	T	V	K	G	R	G	S	N	Q	H	A	K	S	D	W	M	E	M	.	E	K	Q	R	G	I	S	I	T	T	S	V	M	Q	F	P	.	.
Query Conservation																																																															.																	.	.
Alig confidence																																																															.																	.	.
Template Conservation
Template Sequence		D	L	I	E	E	I	R	K	A	E	K	P	Y	V	I	M	F	V	G	F	N	G	S	G	K	T	T	T	I	A	K	L	A	N	W	L	K	N	H	G	F	S	V	V	I	A	A	S	D	T	F	R	A	G	A	I	E	Q	L	E	E	H	A	K	R	I	G	V	K	V	I	K	H	S	Y	G	A	D	P	A
Template Known Secondary structure									T	S		S										T	T	S	S															T	T										T	T															T	T							S	T	T
Template Predicted Secondary structure
Template SS confidence
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
													79	80	.	.	.	.	.	.	.	.	.	90	.					.	.	.	.	.	.	.	.	100	.	.	.	.	.	.			.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.														.	.	.	.																.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.														.	.	.	.																.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	Y	H	D	C	L	V	N	L	L	D	T	P	G	.	.	.	.	H	E	D	F	S	E	D	T	Y	R	T	L	T	A	V	.	.	D	C	C	L	M	V	I	D	A	A	K	G	V	E	D	R	T	R	K	L	M	E	V	T	R	L	R	D	T	P	I	L	T	F	M
Query Conservation		.	.	.	.	.	.	.	.	.	.	.														.	.	.	.																.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.														.	.	.	.																.	.													.																						.
Template Conservation																																																											.																						.
Template Sequence		A	V	A	Y	D	A	I	Q	H	A	K	A	R	G	I	D	V	V	L	I	D	T	A	G	R	S	E	T	N	R	N	L	M	D	E	M	K	K	I	A	R	V	T	K	P	N	L	V	I	F	V	G	D	A	L	A	G	.	N	A	I	V	E	Q	A	R	Q	F	N	E	A	V	K	I	D	G	I	I	L	.
Template Known Secondary structure															T		S								S	S			S	S	S																S								T	T		T	.	T	T												S								.
Template Predicted Secondary structure																																																											.																						.
Template SS confidence
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.		.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
		142	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	K	L	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	K	L	D
Template Known Secondary structure			S	G	G
Template Predicted Secondary structure
Template SS confidence
		270	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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