Job Description P0A7I4 Confidence 97.88% Date Thu Jan 5 11:05:43 GMT 2012 Rank 278 Aligned Residues 130 % Identity 15% Template c3dm5A_ PDB info PDB header:rna binding protein, transport protein Chain: A: PDB Molecule:signal recognition 54 kda protein; PDBTitle: structures of srp54 and srp19, the two proteins assembling2 the ribonucleic core of the signal recognition particle3 from the archaeon pyrococcus furiosus. Resolution 2.51 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.		.	.	.	70	.	.	.	.	.	.	.	.														.
Predicted Secondary structure																																																							.													.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																							.													.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	T	F	A	I	I	S	H	P	D	A	G	K	T	T	I	T	E	K	V	L	L	F	G	Q	A	I	Q	T	A	G	T	V	K	G	R	G	S	N	Q	H	A	K	S	D	W	M	E	M	E	K	Q	R	.	G	I	S	I	T	T	S	V	M	Q	F	P	.	.	.	.	.	.	.	.	.	.	.	.	.	Y
Query Conservation																																																							.													.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																							.													.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	I	L	L	M	V	G	I	Q	G	S	G	K	T	T	T	V	A	K	L	A	R	Y	F	Q	K	R	G	Y	K	V	G	V	V	C	S	D	T	W	R	P	G	A	Y	H	Q	L	R	Q	L	L	D	R	Y	H	I	E	V	F	G	N	P	Q	E	K	D	A	I	K	L	A	K	E	G	V	D	Y	F	K	S
Template Known Secondary structure										T	T	S	S														T	T	T											S	S	T											G	G	G	T							T	T
Template Predicted Secondary structure
Template SS confidence
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
		80	.	.	.	.	.	.	.	.	.	90	.					.	.	.	.	.	.	.	.	100	.	.	.	.	.	.			.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure														.	.	.	.																.	.
Query SS confidence														.	.	.	.																.	.
Query Sequence		H	D	C	L	V	N	L	L	D	T	P	G	.	.	.	.	H	E	D	F	S	E	D	T	Y	R	T	L	T	A	V	.	.	D	C	C	L	M	V	I	D	A	A	K	G	V	E	D	R	T	R	K	L	M	E	V	T	R	L	R	D	T	P	I	L	T	F	M	N	K	L	D
Query Conservation														.	.	.	.																.	.
Alig confidence														.	.	.	.																.	.													.																						.
Template Conservation																																															.																						.
Template Sequence		K	G	V	D	I	I	I	V	D	T	A	G	R	H	K	E	D	K	A	L	I	E	E	M	K	Q	I	S	N	V	I	H	P	H	E	V	I	L	V	I	D	G	T	I	G	.	Q	Q	A	Y	N	Q	A	L	A	F	K	E	A	T	P	I	G	S	I	I	V	.	T	K	L	D
Template Known Secondary structure		T	T		S										S	S																			S								G	G	G	G	.	G	G											S		T	T						.				S
Template Predicted Secondary structure																																															.																						.
Template SS confidence
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.		.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.		.	.	.	250

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions