Job Description P0A7I4 Confidence 98.40% Date Thu Jan 5 11:05:43 GMT 2012 Rank 205 Aligned Residues 159 % Identity 16% Template c3clvA_ PDB info PDB header:signaling protein Chain: A: PDB Molecule:rab5 protein, putative; PDBTitle: crystal structure of rab5a from plasmodium falciparum,2 pfb0500c Resolution 1.89 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure																																																																													.	.	.	.	.
Query SS confidence																																																																													.	.	.	.	.
Query Sequence		L	Q	E	V	A	K	R	R	T	F	A	I	I	S	H	P	D	A	G	K	T	T	I	T	E	K	V	L	L	F	G	Q	A	I	Q	T	A	G	T	V	K	G	R	G	S	N	Q	H	A	K	S	D	W	M	E	M	E	K	Q	R	G	I	S	I	T	T	S	V	M	Q	F	P	Y	H	D	.	.	.	.	.
Query Conservation																																																																													.	.	.	.	.
Alig confidence										.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.
Template Conservation										.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		M	E	K	K	S	S	Y	K	.	T	V	L	L	G	E	S	S	V	G	K	S	S	I	V	L	R	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	K	D	T	F	H	E	N	T	N	T	T	I	G	A	S	F	C	T	Y	V	V	N	L	N	D	N	Y	N	E	N
Template Known Secondary structure						S	S			.							T	T	S	S									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			S				S	S						S										T	T					T	T
Template Predicted Secondary structure										.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.																							.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.
					82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.			.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure		.	.	.																																															.	.
Query SS confidence		.	.	.																																															.	.
Query Sequence		.	.	.	C	L	V	N	L	L	D	T	P	G	H	E	D	F	S	E	D	T	Y	R	T	L	T	A	V	D	C	C	L	M	V	I	D	A	A	K	G	V	E	D	R	T	R	K	L	M	.	.	E	V	T	R	L	R	D	T	P	I	L	T	F	M	N	K	L	D	R	D	I	R	D	P	M	E	L	L	D
Query Conservation		.	.	.																																															.	.
Alig confidence		.	.	.																																															.	.
Template Conservation
Template Sequence		L	C	N	I	K	F	D	I	W	D	T	A	G	Q	E	R	Y	A	S	I	V	P	L	Y	Y	R	G	A	T	C	A	I	V	V	F	D	I	S	N	S	N	T	L	D	R	A	K	T	W	V	N	Q	L	K	I	S	S	N	Y	I	I	I	L	V	A	N	K	I	D	K	N	F	Q	V	D	I	L	E	V	Q
Template Known Secondary structure		T											T	T	G	G	G		T	T	T						T	T		S								T	T																			S											T	T					S
Template Predicted Secondary structure
Template SS confidence
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	V	E	N	E	L	K	I	G	C	A	P	I	T	W	P	I	G	C	G	K	L	F	K	G	V	Y	H	L	Y	K	D	E	T	Y	L	Y	Q	S	G	K	G	H	T	I	Q	E	V	R	I	V	K	G	L	N	N	P	D	L	D	A	A	V	G	E	D	L	A	Q	Q	L	R	D	E	L	E	L	V	K	G
Query Conservation
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	Y	A	Q	D	N	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure							T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		171	.	.	.	.	.	.
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	S	N	E	F	D	K	E	L	F	L	A	G	E	I	T	P	V	F	F	G	T	A	L	G	N	F	G	V	D	H	M	L	D	G	L	V	E	W	A
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	L	F	I	Q	T	S	A	K	T	G	T	N	I	K	N	I	F	Y	M	L	A	E	E	I
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								T	T	T		T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																	178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions