Job Description P0A7I4 Confidence 100.00% Date Thu Jan 5 11:05:43 GMT 2012 Rank 12 Aligned Residues 364 % Identity 17% Template c1wb1C_ PDB info PDB header:protein synthesis Chain: C: PDB Molecule:translation elongation factor selb; PDBTitle: crystal structure of translation elongation factor selb2 from methanococcus maripaludis in complex with gdp Resolution 3.0 Å

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		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	V	A	K	R	R	T	F	A	I	I	S	H	P	D	A	G	K	T	T	I	T	E	K	V	L	L	F	G	Q	A	I	Q	T	A	G	T	V	K	G	R	G	S	N	Q	H	A	K	S	D	W	M	E	M	E	K	Q	R	G	I	S	I	T	T	S	V	M	Q	F	P	Y	H	D	C	L	V	N	L	L	D
Query Conservation
Alig confidence							.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation							.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	F	K	N	I	.	N	L	G	I	F	G	H	I	D	H	G	K	T	T	L	S	K	V	L	T	E	I	A	S	T	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	H	D	K	L	P	E	S	Q	K	R	G	I	T	I	D	I	G	F	S	A	F	K	L	E	N	Y	R	I	T	L	V	D
Template Known Secondary structure				B			.								T	T	S	S	T	T							T	T	T	S	S		S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S		S	S	S	S	T	T	T	T	S						S	S							T	T
Template Predicted Secondary structure							.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		2	.	.	.	.		.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.																.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	P	G	H	E	D	F	S	E	D	T	Y	R	T	L	T	A	V	D	C	C	L	M	V	I	D	A	A	K	G	V	E	D	R	T	R	K	L	M	E	V	T	R	L	R	D	T	P	I	L	T	F	M	N	K	L	D	R	D	I	R	D	P	M	E	L	L	D	E	V	E	N	E	L	K	I	G	C	A	P
Query Conservation
Alig confidence																																																																							.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																							.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	P	G	H	A	D	L	I	R	A	V	V	S	A	A	D	I	I	D	L	A	L	I	V	V	D	A	K	E	G	P	K	T	Q	T	G	E	H	M	L	I	L	D	H	F	N	I	P	I	I	V	V	I	T	K	S	D	N	A	G	T	E	E	I	K	R	T	E	M	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure			S	S	S										S		S	S										T	T	T																T	T											T	T	S											.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																							.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		66	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	T	W	P	I	G	C	G	K	L	F	K	G	V	Y	H	L	Y	K	D	E	T	Y	L	Y	Q	S	G	K	G	H	T	I	Q	E	V	R	I	V	K	G	L	N	N	P	D	L	D	A	A	V	G	E	D	L	A	Q	Q	L	R	D	E	L	E	L	V	K	G	A	S	N	E	F	D	K	E	L	F	L	A
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	M	K	S	I	L	Q	S	T	H	N
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									S	S	G
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																																																																							135	.	.	.	.	140	.	.	.	.	.
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	E	I	T	P	V	F	F	G	T	A	L	G	N	F	G	V	D	H	M	L	D	G	L	V	E	W	A	P	A	P	M	P	R	Q	T	D	T	R	T	V	E	A	S	E	D	K	F	T	G	F	V	F	K	I	Q	A	N	M	D	P	K	H	R	D	R	V	A	F	M	R	V	V	S	G	K	Y	E	K	G
Query Conservation
Alig confidence																																		.	.	.	.	.	.	.																			.	.	.
Template Conservation																																		.	.	.	.	.	.	.																			.	.	.
Template Sequence		L	K	N	S	S	I	I	P	I	S	A	K	T	G	F	G	V	D	E	L	K	N	L	I	I	T	T	L	N	N	A	E	.	.	.	.	.	.	.	I	I	R	N	T	E	S	Y	F	K	M	P	L	D	H	A	F	P	.	.	.	I	K	G	A	G	T	V	V	T	G	T	I	N	K	G	I	V	K	V	G
Template Known Secondary structure		G	G	G								T	T	T	T	T	T													T	T	S		.	.	.	.	.	.	.						S	S												.	.	.		T	T	T										B	S				S	S
Template Predicted Secondary structure																																		.	.	.	.	.	.	.																			.	.	.
Template SS confidence
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.								.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.				.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
		329	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.					.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.		.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.
Predicted Secondary structure																																										.	.	.	.																		.
Query SS confidence																																										.	.	.	.																		.
Query Sequence		M	K	L	R	Q	V	R	T	A	K	D	V	V	I	S	D	A	L	T	F	M	A	G	D	R	S	H	V	E	E	A	Y	P	G	D	I	L	G	L	H	.	.	.	.	N	H	G	T	I	Q	I	G	D	T	F	T	Q	G	E	M	M	.	K	F	T	G	I	P	N	F	A	P	E	L	F	R	R	I	R	L
Query Conservation																																										.	.	.	.																		.
Alig confidence																					.	.	.	.																		.	.	.	.																		.
Template Conservation																					.	.	.	.
Template Sequence		D	E	L	K	V	L	P	I	N	M	S	T	K	V	R	S	I	Q	Y	.	.	.	.	F	K	E	S	V	M	E	A	K	A	G	D	R	V	G	M	A	I	Q	G	V	D	A	K	Q	I	Y	R	G	I	L	T	S	K	D	T	K	L	Q	T	V	D	K	I	V	A	K	I	K	I	S	D	I	F	K	Y	N
Template Known Secondary structure							T	T	T	T											.	.	.	.	S	S	S			S				S	S									S	S		G	G	G									T	T															B		T	T			S	B
Template Predicted Secondary structure																					.	.	.	.
Template SS confidence
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.					.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
		404	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	D	P	L	K	Q	K	Q	L	L	K	G	L	V	Q	L	S	E	E	G	A	V	Q	V	F	R	P	I	S	N	N	D	L	I	V	G	A	V	G	V	L	Q	F	D	V	V	V	A	R	L	K	S	E	Y	N	V	E	A	V	Y	E	S	V	N	V	A	T	A	R	W	V	E	C	A	D	A	K	K	F	E
Query Conservation
Alig confidence																							.	.																																														.	.	.	.	.	.	.	.	.
Template Conservation																							.	.																																														.	.	.	.	.	.	.	.	.
Template Sequence		L	T	P	K	M	K	V	H	L	N	V	G	M	L	I	V	P	A	V	A	V	.	.	P	F	K	K	V	T	F	G	K	T	E	E	N	I	I	L	N	E	V	I	S	G	N	E	Y	A	F	E	L	E	E	K	V	L	A	E	V	G	D	R	V	L	I	T	R	.	.	.	.	.	.	.	.	.	L	D	L
Template Known Secondary structure				S	S								T	T									.	.								S	S								S			B	S	S	B														T	T								.	.	.	.	.	.	.	.	.		S	S
Template Predicted Secondary structure																							.	.																																														.	.	.	.	.	.	.	.	.
Template SS confidence
		293	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.			.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.										.	360	.
		484	.	.	.	.	.	490	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	F	K	R	K	N	E	S	Q	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	P	T	T	L	R	I	G	H	G
Template Known Secondary structure			S	S	S
Template Predicted Secondary structure
Template SS confidence
		364	.	.	.	.	.	370	.	.	.