Job Description P0A7I4 Confidence 100.00% Date Thu Jan 5 11:05:43 GMT 2012 Rank 32 Aligned Residues 249 % Identity 20% Template c1r5nA_ PDB info PDB header:translation Chain: A: PDB Molecule:eukaryotic peptide chain release factor gtp- PDBTitle: crystal structure analysis of sup35 complexed with gdp Resolution 2.90 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	F	A	I	I	S	H	P	D	A	G	K	T	T	I	T	E	K	V	L	L	F	G	Q	A	I	Q	T	A	G	T	V	K	G	R	G	S	N	Q	H	A	K	S	D	W	M	E	M	E	K	Q	R	G	I	S	I	T	T	S	V	M	Q	F	P	Y	H	D	C	L	V	N	L	L	D	T	P	G	H	E	D
Query Conservation
Alig confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	I	V	F	I	G	H	V	D	A	G	K	S	T	L	G	G	N	I	L	F	L	T	G	M	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	K	R	T	M	E	K	I	E	R	E	A	K	R	A	Y	F	E	T	E	H	R	R	F	S	L	L	D	A	P	G	A	S	Q
Template Known Secondary structure									T	T	S	S												T	T	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				S	S											T	T	S
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.																					.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.								.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.		.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure																										.	.	.	.	.	.	.																			.
Query SS confidence																										.	.	.	.	.	.	.																			.
Query Sequence		F	S	E	D	T	Y	R	T	L	T	A	V	D	C	C	L	M	V	I	D	A	A	K	G	.	.	.	.	.	.	.	V	E	D	R	T	R	K	L	M	E	V	T	R	L	R	D	T	P	.	I	L	T	F	M	N	K	L	D	R	D	I	R	D	P	M	E	L	L	D	E	V	E	N	E	L	K	I	G	C
Query Conservation																										.	.	.	.	.	.	.																			.
Alig confidence			.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.																			.																		.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation			.	.	.	.	.	.	.	.	.	.	.																																																								.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	.	.	.	.	.	.	.	.	.	.	.	D	I	G	V	L	V	I	S	A	R	R	G	E	F	E	A	G	F	E	R	G	G	Q	T	R	E	H	A	V	L	A	R	T	Q	G	I	N	H	L	V	V	V	I	N	K	M	D	E	P	S	V	Q	W	S	E	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure			.	.	.	.	.	.	.	.	.	.	.	S									S	T	T					T	T	S	S	S													T	T		S	S								S	S	S	T	T		S	S			.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.																																																								.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		340												.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	P	I	T	W	P	I	G	C	G	K	L	F	K	G	V	Y	H	L	Y	K	D	E	T	Y	L	Y	Q	S	G	K	G	H	T	I	Q	E	V	R	I	V	K	G	L	N	N	P	D	L	D	A	A	V	G	E	D	L	A	Q	Q	L	R	D	E	L	E	L	V	K	G	A	S	N	E	F	D	K	E	L	F
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	R	Y	K	E	C	V	D	K	L	S	M	F	L	R	R	V	A
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																																																																396	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.
		247			.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.														.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
Predicted Secondary structure			.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence			.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	.	.	A	G	E	I	T	P	V	F	F	G	T	A	L	G	N	F	G	V	D	H	M	.	.	.	.	.	.	.	.	.	.	.	.	.	L	D	G	L	V	E	W	A	P	A	P	M	P	R	Q	T	D	T	R	T	V	E	A	S	E	D	K	F	T	G	F	V	F	K	I	Q	A	N	M	D	P	K	H
Query Conservation			.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence			.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.															.	.	.	.	.
Template Conservation																																																					.	.	.	.	.	.	.	.	.															.	.	.	.	.
Template Sequence		G	Y	N	S	K	T	D	V	K	Y	M	P	V	S	A	Y	T	G	Q	N	V	K	D	R	V	D	S	S	V	C	P	W	Y	Q	G	P	S	L	L	E	Y	L	D	S	M	T	H	L	E	R	K	.	.	.	.	.	.	.	.	.	V	N	A	P	F	I	M	P	I	A	S	K	Y	K	.	.	.	.	.	D
Template Known Secondary structure					T	T	T	T							B	T	T	T	T	B	T	T	S	S				T	T	T		T	T			S																	.	.	.	.	.	.	.	.	.		T	S												.	.	.	.	.	S
Template Predicted Secondary structure																																																					.	.	.	.	.	.	.	.	.															.	.	.	.	.
Template SS confidence
		414	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.										.	.	.	.	.	470	.	.	.	.	.	.	.	.						.
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.				.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.
Predicted Secondary structure																																																											.	.	.
Query SS confidence																																																											.	.	.
Query Sequence		R	D	R	V	A	F	M	R	V	V	S	G	K	Y	E	K	G	M	K	L	R	Q	V	R	T	A	K	D	V	V	I	S	D	A	L	T	F	M	A	G	D	R	S	H	V	E	E	A	Y	P	G	D	I	L	G	L	H	.	.	.	N	H	G	T	I	Q	I	G	D	T	F	T	Q	G	E	M	M	K
Query Conservation																																																											.	.	.
Alig confidence																																								.	.	.																	.	.	.
Template Conservation																																								.	.	.
Template Sequence		L	G	T	I	L	E	G	K	I	E	A	G	S	I	K	K	N	S	N	V	L	V	M	P	I	N	Q	T	L	E	V	T	A	I	Y	D	E	A	.	.	.	D	E	E	I	S	S	S	I	C	G	D	Q	V	R	L	R	V	R	G	D	D	S	D	V	Q	T	G	Y	V	L	T	S	T	K	N	P	V
Template Known Secondary structure		S	S									B	S				S	S							T	T	T											T	T	.	.	.					S				T	T									S			S	S			T	T						S	S	S
Template Predicted Secondary structure																																								.	.	.
Template SS confidence
		480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.				.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions